MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:102.2 nTPM
HPA:102.2 nTPM
GTEx:59.4 nTPM
FANTOM5:170.3 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:7.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.9
2411 Female, age 72, unknown 101.2
1830 Male, age 51, unknown 98.8
2019 Male, age 18, unknown 94.3
1833 Male, age 53, unknown 92.3
2828 Female, age 72, unknown 85.4
1870 Female, age 42, unknown 84.1
2586 Male, age 75, left hemisphere 83.2
2219 Male, age 76, both hemispheres 73.8
1827 Male, age 72, unknown 70.1
2666 Male, age 74, left hemisphere 65.5
Dorsal raphe nucleus
nTPM: 68.6
2750 Male, age 76, both hemispheres 99.6
2016 Female, age 72, unknown 70.4
1828 Male, age 53, unknown 67.0
2047 Male, age 72, unknown 54.7
2298 Female, age 72, unknown 51.3
Inferior colliculus
nTPM: 63.3
2849 Male, age 72, unknown 68.1
1890 Male, age 53, unknown 65.5
1848 Female, age 42, unknown 64.3
2097 Female, age 72, unknown 55.3
Median raphe nucleus
nTPM: 57.3
2220 Male, age 76, midline 57.3
Pedunculopontine tegmental nucleus
nTPM: 78.8
2338 Male, age 61, both hemispheres 93.1
2334 Male, age 80, both hemispheres 72.1
1921 Female, age 85, both hemispheres 71.0
Periaquaductal grey, anterior
nTPM: 64.9
1947 Male, age 18, unknown 65.6
2502 Female, age 75, unknown 65.6
1795 Male, age 51, unknown 63.5
Periaquaductal grey, dorsal
nTPM: 60.6
2464 Female, age 72, unknown 80.4
1831 Male, age 72, unknown 62.9
2850 Male, age 76, both hemispheres 50.8
1840 Male, age 53, unknown 48.2
Periaquaductal grey, lateral
nTPM: 65.6
2272 Male, age 74, both hemispheres 75.2
2053 Male, age 18, unknown 68.7
2140 Male, age 76, both hemispheres 53.0
Pretectal area
nTPM: 71.3
2316 Male, age 76, right hemisphere 103.9
2667 Female, age 75, unknown 91.5
2407 Male, age 75, both hemispheres 83.8
1815 Male, age 53, unknown 78.3
2273 Male, age 74, both hemispheres 70.2
2825 Male, age 18, unknown 66.0
2007 Male, age 72, unknown 63.0
1817 Female, age 42, unknown 62.7
2224 Female, age 72, unknown 58.3
1944 Female, age 72, unknown 54.9
1816 Male, age 51, unknown 51.9
Red nucleus
nTPM: 102.2
2823 Male, age 76, right hemisphere 141.1
1865 Male, age 51, unknown 114.1
1904 Male, age 53, unknown 110.5
2227 Male, age 72, unknown 109.8
2769 Male, age 72, unknown 107.3
2503 Female, age 72, unknown 105.2
2785 Male, age 18, unknown 102.7
2588 Male, age 74, left hemisphere 99.2
2584 Male, age 75, left hemisphere 89.0
1821 Female, age 72, unknown 87.2
1954 Female, age 42, unknown 82.3
2725 Female, age 75, unknown 78.3
Substantia nigra
nTPM: 66.4
2583 Male, age 75, right hemisphere 81.2
2409 Female, age 72, unknown 78.9
1851 Male, age 51, unknown 76.5
2590 Female, age 75, unknown 72.2
2699 Male, age 18, unknown 71.8
1889 Female, age 72, unknown 62.7
1941 Male, age 53, unknown 60.0
2241 Male, age 72, unknown 57.3
2665 Male, age 74, both hemispheres 54.6
1916 Female, age 42, unknown 48.6
Superior colliculus
nTPM: 79.3
1913 Female, age 42, unknown 118.9
1995 Male, age 72, unknown 108.1
1895 Male, age 76, right hemisphere 95.9
1839 Male, age 51, unknown 73.9
2587 Male, age 74, left hemisphere 72.6
1796 Male, age 53, unknown 69.3
2664 Male, age 75, both hemispheres 66.8
2668 Female, age 75, unknown 65.3
2087 Female, age 72, unknown 62.3
2261 Male, age 18, unknown 59.4
Ventral tegmental area
nTPM: 73.8
2410 Female, age 72, unknown 91.9
2223 Female, age 72, unknown 82.1
2021 Male, age 53, unknown 77.1
1942 Male, age 51, unknown 68.7
2218 Male, age 76, both hemispheres 64.6
1915 Female, age 42, unknown 58.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.4
Samples: 139

Max nTPM: 221.1
Min nTPM: 14.4
Std nTPM: 33.5
Median nTPM: 52.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 221.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 168.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 156.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 152.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 149.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 138.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 132.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 129.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 114.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 113.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 112.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 170.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 170.3
FF:10158-103A5 76 years, female 170.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 26.9
Min nTPM: 5.6
Sample A Female 26.9
Sample B Female 6.9
Sample C Male 5.6
Sample D Male 7.0
Periaqueductal gray
nTPM: 5.2
Samples: 3

Max nTPM: 5.5
Min nTPM: 4.7
Sample B Female 5.3
Sample C Male 4.7
Sample D Male 5.5
Substantia nigra
nTPM: 13.5
Samples: 4

Max nTPM: 21.0
Min nTPM: 9.8
Sample A Female 13.3
Sample B Female 9.8
Sample C Male 9.8
Sample D Male 21.0
Superior colliculi
nTPM: 7.8
Samples: 4

Max nTPM: 10.5
Min nTPM: 3.1
Sample A Female 10.5
Sample B Female 3.1
Sample C Male 7.3
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.8
Sample A Male 7.4
Sample B Male 7.2
Sample C Female 7.6
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1265 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.4
71213755 Antisense, RP_050816_04_E10, Mouse strain C57BL/6J (56 days, male) 0.4
1266 Antisense, RP_Baylor_103343, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.