MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:603.1 nTPM
HPA:603.1 nTPM
GTEx:671.5 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Mouse:138.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 603.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 594.3
2586 Male, age 75, left hemisphere 615.9
1870 Female, age 42, unknown 601.0
2411 Female, age 72, unknown 600.4
2666 Male, age 74, left hemisphere 596.9
2828 Female, age 72, unknown 594.9
1827 Male, age 72, unknown 594.2
2219 Male, age 76, both hemispheres 591.0
1830 Male, age 51, unknown 584.4
1833 Male, age 53, unknown 582.6
2019 Male, age 18, unknown 581.8
Dorsal raphe nucleus
nTPM: 593.4
2298 Female, age 72, unknown 612.4
2016 Female, age 72, unknown 595.7
2750 Male, age 76, both hemispheres 591.9
1828 Male, age 53, unknown 584.3
2047 Male, age 72, unknown 582.8
Inferior colliculus
nTPM: 594.3
2849 Male, age 72, unknown 599.8
1890 Male, age 53, unknown 595.4
2097 Female, age 72, unknown 595.4
1848 Female, age 42, unknown 586.5
Median raphe nucleus
nTPM: 584.5
2220 Male, age 76, midline 584.5
Pedunculopontine tegmental nucleus
nTPM: 598.9
2334 Male, age 80, both hemispheres 612.1
2338 Male, age 61, both hemispheres 609.9
1921 Female, age 85, both hemispheres 574.8
Periaquaductal grey, anterior
nTPM: 603.1
2502 Female, age 75, unknown 618.0
1947 Male, age 18, unknown 596.9
1795 Male, age 51, unknown 594.5
Periaquaductal grey, dorsal
nTPM: 591.8
1840 Male, age 53, unknown 614.5
2464 Female, age 72, unknown 592.9
1831 Male, age 72, unknown 586.5
2850 Male, age 76, both hemispheres 573.2
Periaquaductal grey, lateral
nTPM: 580.2
2053 Male, age 18, unknown 595.5
2272 Male, age 74, both hemispheres 576.3
2140 Male, age 76, both hemispheres 568.9
Pretectal area
nTPM: 585.2
2825 Male, age 18, unknown 597.8
2224 Female, age 72, unknown 596.0
2316 Male, age 76, right hemisphere 591.1
1815 Male, age 53, unknown 590.8
1816 Male, age 51, unknown 588.0
1817 Female, age 42, unknown 587.9
2007 Male, age 72, unknown 584.3
1944 Female, age 72, unknown 578.4
2667 Female, age 75, unknown 576.7
2407 Male, age 75, both hemispheres 574.2
2273 Male, age 74, both hemispheres 571.7
Red nucleus
nTPM: 596.8
2503 Female, age 72, unknown 631.8
1904 Male, age 53, unknown 608.2
2584 Male, age 75, left hemisphere 604.0
1821 Female, age 72, unknown 603.4
1865 Male, age 51, unknown 600.1
2227 Male, age 72, unknown 597.2
2725 Female, age 75, unknown 597.0
2769 Male, age 72, unknown 594.1
2588 Male, age 74, left hemisphere 589.0
1954 Female, age 42, unknown 584.3
2785 Male, age 18, unknown 580.1
2823 Male, age 76, right hemisphere 572.5
Substantia nigra
nTPM: 601.4
1851 Male, age 51, unknown 621.0
2665 Male, age 74, both hemispheres 619.8
2699 Male, age 18, unknown 613.4
2241 Male, age 72, unknown 603.2
2590 Female, age 75, unknown 601.6
2409 Female, age 72, unknown 601.5
1916 Female, age 42, unknown 592.6
2583 Male, age 75, right hemisphere 591.1
1889 Female, age 72, unknown 589.4
1941 Male, age 53, unknown 580.5
Superior colliculus
nTPM: 596.1
2587 Male, age 74, left hemisphere 612.1
1913 Female, age 42, unknown 606.3
1995 Male, age 72, unknown 604.5
1839 Male, age 51, unknown 597.5
1796 Male, age 53, unknown 595.9
2664 Male, age 75, both hemispheres 592.8
1895 Male, age 76, right hemisphere 591.1
2668 Female, age 75, unknown 589.8
2261 Male, age 18, unknown 589.3
2087 Female, age 72, unknown 581.8
Ventral tegmental area
nTPM: 602.8
1915 Female, age 42, unknown 617.7
2223 Female, age 72, unknown 610.9
2410 Female, age 72, unknown 606.7
2021 Male, age 53, unknown 603.1
1942 Male, age 51, unknown 593.1
2218 Male, age 76, both hemispheres 585.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 671.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 671.5
Samples: 139

Max nTPM: 1971.0
Min nTPM: 283.5
Std nTPM: 243.6
Median nTPM: 626.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1971.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1487.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1377.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1323.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1307.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1150.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1130.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1110.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1051.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1044.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1029.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 138.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 138.7
Samples: 4

Max nTPM: 179.9
Min nTPM: 114.6
Sample A Male 179.9
Sample B Male 120.6
Sample C Female 114.6
Sample D Female 139.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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