MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77858.3 nTPM
HPA:77858.3 nTPM
GTEx:79220.9 nTPM
Pig:5949.5 nTPM
Mouse:8155.5 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77858.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71268.5
2586 Male, age 75, left hemisphere 78408.8
2219 Male, age 76, both hemispheres 77118.8
2666 Male, age 74, left hemisphere 74007.6
1833 Male, age 53, unknown 73220.4
2828 Female, age 72, unknown 72815.3
1830 Male, age 51, unknown 71939.9
1870 Female, age 42, unknown 71070.1
1827 Male, age 72, unknown 65734.1
2019 Male, age 18, unknown 64587.9
2411 Female, age 72, unknown 63782.2
Dorsal raphe nucleus
nTPM: 64745.0
1828 Male, age 53, unknown 69260.9
2750 Male, age 76, both hemispheres 65736.2
2047 Male, age 72, unknown 65193.0
2016 Female, age 72, unknown 64014.2
2298 Female, age 72, unknown 59520.6
Inferior colliculus
nTPM: 70181.9
2849 Male, age 72, unknown 84833.2
1848 Female, age 42, unknown 67814.5
1890 Male, age 53, unknown 67497.2
2097 Female, age 72, unknown 60582.7
Median raphe nucleus
nTPM: 77858.3
2220 Male, age 76, midline 77858.3
Pedunculopontine tegmental nucleus
nTPM: 70085.4
2334 Male, age 80, both hemispheres 74896.4
2338 Male, age 61, both hemispheres 72037.3
1921 Female, age 85, both hemispheres 63322.5
Periaquaductal grey, anterior
nTPM: 64802.1
2502 Female, age 75, unknown 67539.8
1947 Male, age 18, unknown 63820.6
1795 Male, age 51, unknown 63045.9
Periaquaductal grey, dorsal
nTPM: 68652.5
2850 Male, age 76, both hemispheres 77634.4
2464 Female, age 72, unknown 67099.9
1831 Male, age 72, unknown 65754.6
1840 Male, age 53, unknown 64121.3
Periaquaductal grey, lateral
nTPM: 63949.2
2140 Male, age 76, both hemispheres 65717.1
2053 Male, age 18, unknown 64659.2
2272 Male, age 74, both hemispheres 61471.3
Pretectal area
nTPM: 66772.6
2667 Female, age 75, unknown 70924.1
1817 Female, age 42, unknown 70281.1
2825 Male, age 18, unknown 70120.1
1944 Female, age 72, unknown 69871.6
1815 Male, age 53, unknown 69502.5
1816 Male, age 51, unknown 69365.5
2007 Male, age 72, unknown 66568.4
2407 Male, age 75, both hemispheres 64847.6
2224 Female, age 72, unknown 62324.1
2316 Male, age 76, right hemisphere 60625.1
2273 Male, age 74, both hemispheres 60069.0
Red nucleus
nTPM: 71679.1
2503 Female, age 72, unknown 77006.1
2588 Male, age 74, left hemisphere 76483.9
2823 Male, age 76, right hemisphere 76298.2
1954 Female, age 42, unknown 75220.2
1865 Male, age 51, unknown 72182.9
2227 Male, age 72, unknown 70819.4
2584 Male, age 75, left hemisphere 70561.9
2769 Male, age 72, unknown 70075.1
1904 Male, age 53, unknown 69853.1
2785 Male, age 18, unknown 68887.8
1821 Female, age 72, unknown 66515.9
2725 Female, age 75, unknown 66245.5
Substantia nigra
nTPM: 70855.0
2665 Male, age 74, both hemispheres 89110.3
2699 Male, age 18, unknown 81799.9
1916 Female, age 42, unknown 71596.4
1941 Male, age 53, unknown 69593.0
2583 Male, age 75, right hemisphere 66807.2
2241 Male, age 72, unknown 66658.2
1889 Female, age 72, unknown 66461.5
2409 Female, age 72, unknown 65893.2
1851 Male, age 51, unknown 65578.9
2590 Female, age 75, unknown 65051.1
Superior colliculus
nTPM: 66779.6
2664 Male, age 75, both hemispheres 74643.1
2587 Male, age 74, left hemisphere 68566.2
2668 Female, age 75, unknown 67189.0
1839 Male, age 51, unknown 67037.9
1913 Female, age 42, unknown 66211.0
2087 Female, age 72, unknown 66104.9
1895 Male, age 76, right hemisphere 66084.1
1995 Male, age 72, unknown 64389.1
1796 Male, age 53, unknown 64228.8
2261 Male, age 18, unknown 63341.9
Ventral tegmental area
nTPM: 69496.2
2218 Male, age 76, both hemispheres 77429.1
2223 Female, age 72, unknown 73251.0
1942 Male, age 51, unknown 68899.3
2410 Female, age 72, unknown 66427.6
1915 Female, age 42, unknown 65666.1
2021 Male, age 53, unknown 65304.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79220.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79220.9
Samples: 139

Max nTPM: 275234.8
Min nTPM: 17440.3
Std nTPM: 48400.4
Median nTPM: 67546.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 275234.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 231441.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 226391.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 219924.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 207351.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 198081.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 189150.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 180881.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 169911.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 164943.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 163987.5
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MIDBRAIN - Pig RNA-seqi
Average nTPM 5949.5
Pig sample Sample description nTPM
Midbrain
nTPM: 5949.5
Samples: 4

Max nTPM: 8470.0
Min nTPM: 3467.9
Sample A Female 5915.4
Sample B Female 8470.0
Sample C Male 5944.6
Sample D Male 3467.9
Periaqueductal gray
nTPM: 4923.4
Samples: 3

Max nTPM: 5715.6
Min nTPM: 4050.7
Sample B Female 5003.8
Sample C Male 5715.6
Sample D Male 4050.7
Substantia nigra
nTPM: 4897.6
Samples: 4

Max nTPM: 6990.9
Min nTPM: 2749.8
Sample A Female 6990.9
Sample B Female 4037.5
Sample C Male 5812.2
Sample D Male 2749.8
Superior colliculi
nTPM: 4352.4
Samples: 4

Max nTPM: 6525.0
Min nTPM: 526.0
Sample A Female 6525.0
Sample B Female 526.0
Sample C Male 5638.7
Sample D Male 4719.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8155.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 8155.5
Samples: 4

Max nTPM: 8458.9
Min nTPM: 7796.3
Sample A Male 8458.9
Sample B Male 7999.9
Sample C Female 8366.8
Sample D Female 7796.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
75042238 Antisense, RP_051219_02_B02, Mouse strain C57BL/6J (56 days, male) 7.3
73949707 Antisense, RP_051219_02_B02, Mouse strain C57BL/6J (56 days, male) 5.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.