Expression of MT-ND5 in testis cancer - The Human Protein Atlas

TESTIS CANCER - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

MT-ND5 is not prognostic in testis cancer

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 913.38

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average FPKM

1345.0

Number of samples

134

Samples

Sample	Description	FPKM
TCGA-ZM-AA06-01A	45 years, male, white, stage:ib, alive, 1498 days	11896.3
TCGA-XE-AAOL-01A	38 years, male, black or african american, stage:i, alive, 13 days	10605.3
TCGA-ZM-AA0E-01A	39 years, male, white, stage:ia, alive, 811 days	9847.6
TCGA-ZM-AA05-01A	36 years, male, white, stage:iic, alive, 1126 days	7967.3
TCGA-ZM-AA0H-01A	50 years, male, white, stage:is, alive, 1736 days	7667.7
TCGA-ZM-AA0F-01A	35 years, male, white, stage:ia, alive, 681 days	6665.0
TCGA-XE-AAO6-01A	47 years, male, white, stage:ia, alive, 240 days	6523.8
TCGA-ZM-AA0N-01A	44 years, male, white, stage:ib, alive, 634 days	5198.4
TCGA-ZM-AA0D-01A	34 years, male, white, stage:ia, alive, 848 days	3907.2
TCGA-ZM-AA0B-01A	32 years, male, white, stage:ia, alive, 838 days	3899.7
TCGA-XE-AAO4-01A	40 years, male, white, stage:ia, alive, 367 days	3248.9
TCGA-YU-A90S-01A	26 years, male, white, stage:ia, alive, 971 days	2939.6
TCGA-2G-AAG6-01A	24 years, male, white, stage:is, alive, 2231 days	2405.0
TCGA-2G-AAHG-01A	25 years, male, white, stage:i, alive, 1819 days	2286.2
TCGA-S6-A8JX-01A	27 years, male, white, stage:ib, alive, 552 days	1881.4
TCGA-XY-A89B-01A	35 years, male, white, stage:ia, alive, 471 days	1855.4
TCGA-WZ-A7V4-01A	28 years, male, white, stage:i, alive, 894 days	1773.4
TCGA-VF-A8AB-01A	31 years, male, black or african american, stage:ia, alive, 760 days	1758.2
TCGA-2G-AAGG-01A	20 years, male, white, stage:iiic, alive, 2611 days	1605.8
TCGA-YU-A912-01A	34 years, male, black or african american, stage:iiic, alive, 866 days	1575.4
TCGA-YU-A90Y-01A	23 years, male, black or african american, stage:iiic, dead, 17 days	1548.4
TCGA-S6-A8JY-01A	27 years, male, white, stage:is, alive, 278 days	1544.3
TCGA-YU-A90W-01A	45 years, male, white, stage:ia, alive, 1113 days	1495.0
TCGA-4K-AA1I-01A	26 years, male, white, stage:ia, alive, 3 days	1373.0
TCGA-WZ-A7V5-01A	27 years, male, white, stage:i, alive, 1061 days	1354.9
TCGA-2G-AAG3-01A	53 years, male, white, stage:is, alive, 1593 days	1344.7
TCGA-XE-AAOD-01A	39 years, male, white, stage:ib, alive, 2058 days	1335.3
TCGA-XE-AAOC-01A	31 years, male, white, stage:ia, alive, 270 days	1301.0
TCGA-2G-AAG9-01A	25 years, male, white, stage:iiib, alive, 2234 days	1282.6
TCGA-XE-AAOF-01A	50 years, male, asian, stage:ia, alive, 1268 days	1278.8
TCGA-2G-AAH2-01A	20 years, male, white, stage:is, alive, 6060 days	1262.1
TCGA-YU-A90Q-01A	21 years, male, stage:ib, alive, 1964 days	1234.4
TCGA-WZ-A8D5-01A	38 years, male, white, alive, 774 days	1221.9
TCGA-2X-A9D5-01A	49 years, male, white, stage:i, alive, 435 days	1213.5
TCGA-2G-AAFE-01A	37 years, male, white, stage:iia, alive, 4702 days	1211.3
TCGA-XE-A8H4-01A	23 years, male, white, stage:ia, alive, 559 days	1209.4
TCGA-2G-AAGV-01A	23 years, male, white, alive, 4527 days	1207.6
TCGA-2G-AAG5-01A	36 years, male, white, stage:is, alive, 2299 days	1199.4
TCGA-2G-AAGY-01A	28 years, male, white, stage:is, alive, 5329 days	1144.9
TCGA-2G-AAGP-01A	33 years, male, white, stage:iia, alive, 4018 days	1104.0
TCGA-2G-AAKM-01A	14 years, male, white, stage:ii, dead, 6972 days	1091.2
TCGA-YU-A90P-01A	25 years, male, white, stage:ia, alive, 2069 days	1059.9
TCGA-YU-A94I-01A	66 years, male, stage:ia, alive, 536 days	1048.9
TCGA-SB-A6J6-01A	22 years, male, white, stage:ia, alive, 413 days	1038.1
TCGA-VF-A8A9-01A	31 years, male, white, stage:ia, alive, 1119 days	1013.5
TCGA-XE-AANV-01A	52 years, male, stage:ib, alive, 1701 days	984.2
TCGA-2G-AAHC-01A	33 years, male, white, stage:is, alive, 5539 days	975.3
TCGA-XE-A9SE-01A	35 years, male, white, stage:ia, alive, 708 days	959.3
TCGA-2G-AAHA-01A	48 years, male, white, stage:ib, alive, 3349 days	951.6
TCGA-2G-AAH3-01A	20 years, male, white, stage:i, alive, 1822 days	945.2
TCGA-2G-AAF8-01A	33 years, male, white, stage:ia, alive, 3911 days	937.5
TCGA-2X-A9D6-01A	42 years, male, white, stage:i, alive, 607 days	930.3
TCGA-XE-AAOB-01A	27 years, male, white, stage:is, dead, 513 days	915.6
TCGA-2G-AAGC-01A	28 years, male, white, stage:is, alive, 2585 days	911.2
TCGA-SN-A84W-01A	30 years, male, white, stage:is, alive, 293 days	896.7
TCGA-YU-AA61-01A	29 years, male, white, stage:is, alive, 864 days	896.6
TCGA-2G-AAF4-01A	30 years, male, white, stage:i, alive, 2315 days	892.0
TCGA-WZ-A7V3-01A	20 years, male, white, stage:i, alive, 753 days	885.5
TCGA-XE-AAOJ-01A	24 years, male, white, stage:is, alive, 1550 days	882.6
TCGA-W4-A7U4-01A	23 years, male, white, alive, 738 days	876.7
TCGA-SN-A6IS-01A	26 years, male, white, stage:is, alive, 496 days	874.4
TCGA-2G-AAFJ-01A	23 years, male, asian, alive, 792 days	867.8
TCGA-XE-AANI-01A	37 years, male, white, stage:is, alive, 1041 days	854.3
TCGA-2G-AAH0-01A	30 years, male, white, stage:is, alive, 5477 days	854.2
TCGA-XY-A8S3-01B	24 years, male, white, stage:is, alive, 843 days	837.9
TCGA-4K-AA1H-01A	26 years, male, white, stage:ia, alive, 518 days	821.9
TCGA-VF-A8AE-01A	39 years, male, white, stage:ia, alive, 727 days	812.1
TCGA-2G-AAFV-01A	31 years, male, white, stage:is, alive, 1389 days	800.4
TCGA-YU-A94D-01A	28 years, male, stage:iiib, alive, 2167 days	793.5
TCGA-S6-A8JW-01A	37 years, male, white, stage:is, alive, 698 days	738.5
TCGA-2G-AAFH-01A	38 years, male, white, stage:iib, alive, 1375 days	734.2
TCGA-2G-AAG0-01A	23 years, male, white, stage:is, alive, 1529 days	717.2
TCGA-2G-AAGM-01A	51 years, male, white, stage:is, alive, 3891 days	711.6
TCGA-XE-A8H1-01A	24 years, male, white, stage:is, alive, 209 days	700.3
TCGA-2G-AAKD-01A	18 years, male, white, stage:iii, alive, 6340 days	685.3
TCGA-XE-AANJ-01A	39 years, male, white, stage:is, alive, 2007 days	674.7
TCGA-2G-AAGO-01A	41 years, male, white, stage:is, alive, 4026 days	658.5
TCGA-SO-A8JP-01A	29 years, male, white, stage:i, alive, 540 days	649.0
TCGA-W4-A7U3-01A	26 years, male, white, alive, 149 days	648.4
TCGA-YU-AA4L-01A	27 years, male, black or african american, stage:iiic, alive, 1573 days	636.4
TCGA-2G-AAKG-01A	22 years, male, white, stage:i, alive, 6598 days	634.1
TCGA-2G-AAKL-01A	26 years, male, white, stage:ii, alive, 7023 days	630.3
TCGA-2G-AAFG-01A	30 years, male, white, stage:is, alive, 6183 days	629.2
TCGA-2G-AAH8-01A	45 years, male, white, stage:iiic, alive, 2248 days	620.8
TCGA-XY-A9T9-01A	37 years, male, white, stage:is, alive, 281 days	614.3
TCGA-2G-AAFY-01A	24 years, male, white, stage:iia, alive, 1099 days	610.1
TCGA-2G-AAEX-01A	38 years, male, white, stage:is, alive, 1259 days	599.5
TCGA-2G-AAG7-01A	33 years, male, white, stage:is, alive, 2475 days	597.7
TCGA-VF-A8AA-01A	51 years, male, white, stage:i, alive, 1146 days	596.6
TCGA-2G-AAGI-01A	33 years, male, white, stage:is, alive, 3137 days	591.9
TCGA-2G-AAKH-01A	19 years, male, white, stage:ii, alive, 6862 days	581.7
TCGA-SB-A76C-01A	38 years, male, white, alive, 42 days	578.8
TCGA-2G-AAGF-01A	28 years, male, white, stage:is, alive, 2734 days	575.3
TCGA-W4-A7U2-01A	26 years, male, white, alive, 1263 days	573.6
TCGA-XE-AAO3-01A	33 years, male, asian, stage:i, alive, 2857 days	573.0
TCGA-2G-AAGE-01A	21 years, male, white, stage:is, alive, 2478 days	568.8
TCGA-2G-AAGZ-01A	27 years, male, white, stage:iiia, alive, 5233 days	565.7
TCGA-XE-A8H5-01A	29 years, male, stage:is, alive, 1217 days	542.1
TCGA-2G-AAG8-01A	21 years, male, white, stage:ib, alive, 2289 days	537.0
TCGA-4K-AAAL-01A	31 years, male, white, stage:is, alive, 483 days	529.9
TCGA-2G-AAGS-01A	39 years, male, white, stage:iiib, alive, 4816 days	529.3
TCGA-2G-AAFI-01A	41 years, male, white, stage:ib, alive, 675 days	516.3
TCGA-VF-A8AD-01A	36 years, male, white, stage:ib, alive, 1006 days	501.1
TCGA-2G-AAGA-01A	38 years, male, white, stage:iia, alive, 2439 days	489.9
TCGA-2G-AAL7-01A	32 years, male, white, stage:is, alive, 3991 days	488.6
TCGA-2G-AAGT-01A	30 years, male, white, stage:is, alive, 4406 days	486.6
TCGA-2G-AAEW-01A	31 years, male, white, stage:is, dead, 618 days	469.7
TCGA-2G-AAGX-01A	22 years, male, white, stage:ia, alive, 5514 days	450.9
TCGA-XY-A8S2-01A	67 years, male, white, stage:i, alive, 672 days	447.5
TCGA-2G-AAF1-01A	28 years, male, asian, stage:is, alive, 1403 days	426.6
TCGA-2G-AAL5-01A	31 years, male, white, stage:i, alive, 7437 days	425.8
TCGA-2G-AAH4-01A	34 years, male, white, stage:ii, alive, 6210 days	422.2
TCGA-2G-AAGN-01A	41 years, male, white, stage:iiib, alive, 3656 days	411.0
TCGA-2G-AAHN-01A	32 years, male, white, stage:i, alive, 6445 days	408.4
TCGA-X3-A8G4-01A	33 years, male, white, stage:is, alive, 856 days	399.7
TCGA-XE-AANR-01A	24 years, male, white, stage:i, alive, 14 days	396.0
TCGA-2G-AAFL-01A	35 years, male, white, stage:ib, alive, 750 days	394.4
TCGA-2G-AALP-01A	43 years, male, white, stage:iiib, alive, 2645 days	394.2
TCGA-VF-A8A8-01A	18 years, male, white, stage:ia, alive, 1131 days	391.5
TCGA-2G-AAFZ-01A	32 years, male, white, stage:iii, alive, 1353 days	365.5
TCGA-2G-AAHT-01A	32 years, male, white, stage:is, alive, 542 days	348.1
TCGA-2G-AAF6-01A	28 years, male, white, stage:is, alive, 3491 days	347.4
TCGA-2G-AAFO-01A	33 years, male, white, stage:iia, alive, 685 days	344.7
TCGA-2G-AAFM-01A	31 years, male, white, stage:iia, alive, 503 days	340.1
TCGA-2G-AAGK-01A	20 years, male, white, stage:is, alive, 3621 days	335.3
TCGA-2G-AAGJ-01A	28 years, male, black or african american, stage:ia, alive, 2938 days	323.8
TCGA-VF-A8AC-01A	29 years, male, white, stage:ia, alive, 1083 days	318.3
TCGA-2G-AAFN-01A	26 years, male, white, stage:iiib, alive, 773 days	316.6
TCGA-2G-AAGW-01A	38 years, male, white, stage:is, alive, 4899 days	311.7
TCGA-SN-A84Y-01A	18 years, male, white, stage:is, alive, 524 days	305.4
TCGA-SN-A84X-01A	21 years, male, white, stage:is, alive, 312 days	294.1
TCGA-4K-AA1G-01A	34 years, male, white, stage:is, alive, 436 days	243.9
TCGA-2G-AAHL-01A	26 years, male, white, stage:i, alive, 7081 days	236.0
TCGA-2G-AAHP-01A	31 years, male, white, stage:is, alive, 5667 days	68.3
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TESTIS CANCER - Protein expressionⁱ

Pending cancer tissue analysis