We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SCAMP5
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SCAMP5
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:283.7 nTPM
GTEx:283.7 nTPM
FANTOM5:116.2 Scaled Tags Per Million
Pig:79.9 nTPM
Mouse:386.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 283.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 283.7
Samples: 105

Max nTPM: 521.3
Min nTPM: 100.8
Std nTPM: 85.9
Median nTPM:
218_1 71 years, female 521.3
352_1 62 years, male 486.3
319_1 81 years, male 453.2
321_1 62 years, female 438.5
286_1 68 years, female 433.2
350_1 84 years, female 427.6
320_1 89 years, female 417.2
322_1 76 years, male 416.4
229_1 69 years, female 411.8
376_1 75 years, female 399.1
386_1 76 years, male 386.3
172_1 72 years, female 383.8
394_1 75 years, female 376.8
293_1 68 years, female 376.0
316_1 62 years, male 373.6
292_1 71 years, male 373.4
163_1 78 years, male 369.9
354_1 81 years, female 367.6
335_1 73 years, female 365.2
237_1 82 years, male 363.8
389_1 86 years, female 363.3
6_1 73 years, female 360.1
405_1 91 years, male 358.6
375_1 74 years, female 355.5
355_1 70 years, female 351.5
353_1 82 years, female 345.8
425_1 59 years, female 342.4
318_1 68 years, male 339.3
243_1 75 years, male 338.9
377_1 82 years, female 337.2
406_1 79 years, male 332.4
526_1 61 years, male 331.0
217_1 76 years, male 330.0
447_1 81 years, male 328.3
356_1 87 years, female 327.7
266_1 85 years, male 324.3
349_1 83 years, male 323.2
379_1 60 years, male 320.3
251_1 78 years, male 318.9
35_1 74 years, female 317.8
246_1 77 years, male 317.0
480_1 63 years, male 312.1
2_1 77 years, female 306.6
517_1 88 years, male 304.5
177_1 74 years, male 295.0
518_1 75 years, female 290.3
384_1 83 years, male 288.5
347_1 72 years, male 288.1
317_1 60 years, male 288.0
348_1 84 years, male 285.7
396_1 62 years, male 284.5
189_1 76 years, male 283.3
291_1 76 years, male 283.2
311_1 78 years, male 280.0
404_1 82 years, female 279.7
153_1 70 years, female 279.3
499_1 55 years, female 276.3
503_1 68 years, male 275.3
324_1 76 years, male 272.8
265_1 87 years, male 267.8
307_1 66 years, female 261.3
506_1 65 years, male 260.3
351_1 91 years, male 256.4
173_1 67 years, male 251.0
295_1 61 years, female 250.1
17_1 71 years, male 248.8
145_1 84 years, male 248.7
115_1 83 years, male 247.9
99_1 64 years, male 246.7
9_1 66 years, female 244.0
137_1 83 years, male 242.4
452_1 88 years, female 238.1
313_1 79 years, female 237.1
264_1 73 years, female 236.9
468_1 89 years, male 236.3
142_1 61 years, female 225.1
18_1 88 years, male 221.6
81_1 67 years, male 219.7
139_1 64 years, female 219.7
126_1 63 years, male 215.8
4_1 88 years, female 215.0
415_1 77 years, female 212.2
288_1 66 years, female 211.5
254_1 77 years, female 210.3
495_1 57 years, female 204.9
43_1 64 years, female 202.6
120_1 70 years, female 201.1
117_1 61 years, male 200.4
315_1 62 years, female 199.1
162_1 79 years, female 193.1
109_1 81 years, female 190.9
42_1 85 years, male 187.1
41_1 94 years, female 184.9
32_1 67 years, male 173.6
314_1 67 years, male 167.5
414_1 84 years, female 166.2
119_1 70 years, female 161.4
89_1 63 years, male 152.6
466_1 57 years, female 150.7
413_1 59 years, female 140.7
490_1 67 years, female 137.8
308_1 70 years, female 133.3
149_1 88 years, male 124.8
501_1 88 years, male 117.2
491_1 89 years, female 100.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 116.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 116.2
FF:10030-101E3 24-65 years, mixed 116.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.9
Pig sample Sample description nTPM
Retina
nTPM: 79.9
Samples: 4

Max nTPM: 94.9
Min nTPM: 67.0
Sample A Female 78.5
Sample B Female 94.9
Sample C Male 79.0
Sample D Male 67.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 386.7
Mouse sample Sample description nTPM
Retina
nTPM: 386.8
Samples: 4

Max nTPM: 406.1
Min nTPM: 361.2
Sample A Male 406.1
Sample B Male 398.5
Sample C Female 381.2
Sample D Female 361.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.