MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.4 nTPM
HPA:67.4 nTPM
GTEx:79.4 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:87.8 nTPM
Mouse:232.5 nTPM
Allen mouse:17.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.9
2666 Male, age 74, left hemisphere 91.4
2586 Male, age 75, left hemisphere 75.7
1827 Male, age 72, unknown 75.1
2219 Male, age 76, both hemispheres 61.5
2019 Male, age 18, unknown 61.2
2828 Female, age 72, unknown 59.0
2411 Female, age 72, unknown 54.8
1870 Female, age 42, unknown 46.3
1833 Male, age 53, unknown 44.2
1830 Male, age 51, unknown 40.0
Dorsal raphe nucleus
nTPM: 47.8
1828 Male, age 53, unknown 55.1
2047 Male, age 72, unknown 52.3
2298 Female, age 72, unknown 51.5
2750 Male, age 76, both hemispheres 48.2
2016 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 58.8
2097 Female, age 72, unknown 71.0
1848 Female, age 42, unknown 58.1
1890 Male, age 53, unknown 56.1
2849 Male, age 72, unknown 50.1
Median raphe nucleus
nTPM: 58.5
2220 Male, age 76, midline 58.5
Pedunculopontine tegmental nucleus
nTPM: 51.9
1921 Female, age 85, both hemispheres 67.6
2334 Male, age 80, both hemispheres 49.9
2338 Male, age 61, both hemispheres 38.2
Periaquaductal grey, anterior
nTPM: 67.4
1947 Male, age 18, unknown 72.0
1795 Male, age 51, unknown 69.2
2502 Female, age 75, unknown 61.0
Periaquaductal grey, dorsal
nTPM: 44.5
1831 Male, age 72, unknown 47.8
1840 Male, age 53, unknown 47.8
2464 Female, age 72, unknown 46.1
2850 Male, age 76, both hemispheres 36.4
Periaquaductal grey, lateral
nTPM: 35.3
2053 Male, age 18, unknown 46.6
2140 Male, age 76, both hemispheres 35.2
2272 Male, age 74, both hemispheres 24.2
Pretectal area
nTPM: 64.7
1816 Male, age 51, unknown 106.7
2007 Male, age 72, unknown 92.0
1817 Female, age 42, unknown 87.1
1944 Female, age 72, unknown 87.0
1815 Male, age 53, unknown 72.3
2667 Female, age 75, unknown 60.9
2825 Male, age 18, unknown 48.5
2407 Male, age 75, both hemispheres 46.1
2224 Female, age 72, unknown 44.3
2316 Male, age 76, right hemisphere 43.2
2273 Male, age 74, both hemispheres 23.9
Red nucleus
nTPM: 49.2
2584 Male, age 75, left hemisphere 60.5
1821 Female, age 72, unknown 59.7
2785 Male, age 18, unknown 57.1
2823 Male, age 76, right hemisphere 52.5
1954 Female, age 42, unknown 51.8
2588 Male, age 74, left hemisphere 49.3
2769 Male, age 72, unknown 47.6
2227 Male, age 72, unknown 46.0
1865 Male, age 51, unknown 43.0
2503 Female, age 72, unknown 42.9
1904 Male, age 53, unknown 41.0
2725 Female, age 75, unknown 38.5
Substantia nigra
nTPM: 63.4
1941 Male, age 53, unknown 86.8
2665 Male, age 74, both hemispheres 84.6
1916 Female, age 42, unknown 81.2
1889 Female, age 72, unknown 78.8
1851 Male, age 51, unknown 64.3
2583 Male, age 75, right hemisphere 57.5
2241 Male, age 72, unknown 56.1
2409 Female, age 72, unknown 47.3
2590 Female, age 75, unknown 39.3
2699 Male, age 18, unknown 38.6
Superior colliculus
nTPM: 64.2
2668 Female, age 75, unknown 121.1
2087 Female, age 72, unknown 79.4
2664 Male, age 75, both hemispheres 70.9
2261 Male, age 18, unknown 70.6
1796 Male, age 53, unknown 67.8
1895 Male, age 76, right hemisphere 66.8
1839 Male, age 51, unknown 53.1
1913 Female, age 42, unknown 39.5
2587 Male, age 74, left hemisphere 37.6
1995 Male, age 72, unknown 35.0
Ventral tegmental area
nTPM: 55.6
2410 Female, age 72, unknown 74.5
2218 Male, age 76, both hemispheres 68.4
1915 Female, age 42, unknown 60.9
1942 Male, age 51, unknown 52.1
2223 Female, age 72, unknown 41.3
2021 Male, age 53, unknown 36.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.4
Samples: 139

Max nTPM: 336.5
Min nTPM: 22.2
Std nTPM: 47.8
Median nTPM: 65.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 336.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 251.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 200.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 183.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 182.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 180.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 176.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 159.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 149.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 149.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 148.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.8
Pig sample Sample description nTPM
Midbrain
nTPM: 87.6
Samples: 4

Max nTPM: 130.3
Min nTPM: 65.2
Sample A Female 66.2
Sample B Female 65.2
Sample C Male 130.3
Sample D Male 88.6
Periaqueductal gray
nTPM: 59.7
Samples: 3

Max nTPM: 70.9
Min nTPM: 49.2
Sample B Female 58.9
Sample C Male 70.9
Sample D Male 49.2
Substantia nigra
nTPM: 87.8
Samples: 4

Max nTPM: 126.6
Min nTPM: 45.5
Sample A Female 126.6
Sample B Female 59.8
Sample C Male 119.3
Sample D Male 45.5
Superior colliculi
nTPM: 87.8
Samples: 4

Max nTPM: 112.1
Min nTPM: 48.7
Sample A Female 100.4
Sample B Female 48.7
Sample C Male 112.1
Sample D Male 90.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 232.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 232.5
Samples: 4

Max nTPM: 242.1
Min nTPM: 220.5
Sample A Male 220.5
Sample B Male 225.3
Sample C Female 242.1
Sample D Female 242.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.3
583561 Antisense, RP_040831_02_H11, Mouse strain C57BL/6J (56 days, male) 19.7
81599672 Antisense, RP_071219_04_G12, Mouse strain C57BL/6J (56 days, male) 15.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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