MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:152802.2 nTPM
HPA:152802.2 nTPM
GTEx:105565.1 nTPM
Pig:73449.3 nTPM
Mouse:30959.9 nTPM
Allen mouse:24.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152802.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145918.7
2586 Male, age 75, left hemisphere 179668.4
2828 Female, age 72, unknown 159918.9
2666 Male, age 74, left hemisphere 152281.5
2219 Male, age 76, both hemispheres 152155.7
1833 Male, age 53, unknown 141581.2
2019 Male, age 18, unknown 139576.9
1870 Female, age 42, unknown 138177.5
1827 Male, age 72, unknown 136899.4
1830 Male, age 51, unknown 136108.7
2411 Female, age 72, unknown 122818.9
Dorsal raphe nucleus
nTPM: 133299.6
1828 Male, age 53, unknown 145991.9
2047 Male, age 72, unknown 135345.6
2750 Male, age 76, both hemispheres 133900.2
2016 Female, age 72, unknown 131391.8
2298 Female, age 72, unknown 119868.6
Inferior colliculus
nTPM: 136766.0
2849 Male, age 72, unknown 142647.3
1890 Male, age 53, unknown 141860.6
1848 Female, age 42, unknown 137463.0
2097 Female, age 72, unknown 125093.2
Median raphe nucleus
nTPM: 147957.7
2220 Male, age 76, midline 147957.7
Pedunculopontine tegmental nucleus
nTPM: 140051.2
2334 Male, age 80, both hemispheres 153022.4
2338 Male, age 61, both hemispheres 137132.7
1921 Female, age 85, both hemispheres 129998.6
Periaquaductal grey, anterior
nTPM: 133347.4
2502 Female, age 75, unknown 139636.7
1795 Male, age 51, unknown 131617.0
1947 Male, age 18, unknown 128788.5
Periaquaductal grey, dorsal
nTPM: 134249.3
2850 Male, age 76, both hemispheres 139835.2
1831 Male, age 72, unknown 134706.6
2464 Female, age 72, unknown 131753.0
1840 Male, age 53, unknown 130702.5
Periaquaductal grey, lateral
nTPM: 124354.0
2053 Male, age 18, unknown 128665.2
2140 Male, age 76, both hemispheres 125209.2
2272 Male, age 74, both hemispheres 119187.5
Pretectal area
nTPM: 142248.2
1817 Female, age 42, unknown 161740.3
1816 Male, age 51, unknown 160479.8
1944 Female, age 72, unknown 159907.7
2667 Female, age 75, unknown 156266.4
2007 Male, age 72, unknown 152580.7
1815 Male, age 53, unknown 150212.6
2825 Male, age 18, unknown 135070.2
2407 Male, age 75, both hemispheres 126348.6
2316 Male, age 76, right hemisphere 122941.6
2224 Female, age 72, unknown 122158.8
2273 Male, age 74, both hemispheres 117024.2
Red nucleus
nTPM: 143084.4
2584 Male, age 75, left hemisphere 156723.7
2588 Male, age 74, left hemisphere 155775.4
2503 Female, age 72, unknown 148211.9
1954 Female, age 42, unknown 144838.8
2785 Male, age 18, unknown 144300.0
2823 Male, age 76, right hemisphere 140741.0
1821 Female, age 72, unknown 140023.4
2227 Male, age 72, unknown 139793.3
1865 Male, age 51, unknown 139577.0
2769 Male, age 72, unknown 139203.0
1904 Male, age 53, unknown 136896.9
2725 Female, age 75, unknown 130928.4
Substantia nigra
nTPM: 152802.2
2665 Male, age 74, both hemispheres 213391.7
2699 Male, age 18, unknown 156775.4
1916 Female, age 42, unknown 156600.9
2583 Male, age 75, right hemisphere 151130.3
1889 Female, age 72, unknown 148933.8
1941 Male, age 53, unknown 145550.5
1851 Male, age 51, unknown 144475.1
2241 Male, age 72, unknown 142841.3
2590 Female, age 75, unknown 138571.4
2409 Female, age 72, unknown 129751.9
Superior colliculus
nTPM: 140250.3
2664 Male, age 75, both hemispheres 162515.1
2087 Female, age 72, unknown 154244.9
2587 Male, age 74, left hemisphere 139995.7
2668 Female, age 75, unknown 139243.7
2261 Male, age 18, unknown 137771.4
1839 Male, age 51, unknown 135624.2
1913 Female, age 42, unknown 135548.8
1995 Male, age 72, unknown 133803.6
1796 Male, age 53, unknown 132892.2
1895 Male, age 76, right hemisphere 130863.5
Ventral tegmental area
nTPM: 139960.5
2218 Male, age 76, both hemispheres 154732.3
1942 Male, age 51, unknown 141269.3
2223 Female, age 72, unknown 140115.2
1915 Female, age 42, unknown 139188.6
2410 Female, age 72, unknown 133305.7
2021 Male, age 53, unknown 131151.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105565.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105565.1
Samples: 139

Max nTPM: 471908.1
Min nTPM: 6189.9
Std nTPM: 92119.3
Median nTPM: 76452.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 471908.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 463690.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 453310.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 312792.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 309106.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 300048.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 290491.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 283600.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 279874.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 270044.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 260010.7
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MIDBRAIN - Pig RNA-seqi
Average nTPM 73449.3
Pig sample Sample description nTPM
Midbrain
nTPM: 70918.6
Samples: 4

Max nTPM: 87433.7
Min nTPM: 49620.0
Sample A Female 49620.0
Sample B Female 87433.7
Sample C Male 83582.1
Sample D Male 63038.4
Periaqueductal gray
nTPM: 52073.4
Samples: 3

Max nTPM: 63383.1
Min nTPM: 39877.1
Sample B Female 63383.1
Sample C Male 52960.0
Sample D Male 39877.1
Substantia nigra
nTPM: 64470.9
Samples: 4

Max nTPM: 89374.1
Min nTPM: 39404.5
Sample A Female 89374.1
Sample B Female 58199.8
Sample C Male 70905.1
Sample D Male 39404.5
Superior colliculi
nTPM: 73449.3
Samples: 4

Max nTPM: 92293.4
Min nTPM: 48095.4
Sample A Female 81142.7
Sample B Female 48095.4
Sample C Male 92293.4
Sample D Male 72265.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30959.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 30960.0
Samples: 4

Max nTPM: 32676.1
Min nTPM: 29312.9
Sample A Male 32676.1
Sample B Male 31399.2
Sample C Female 30451.6
Sample D Female 29312.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.0
73927706 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 24.0
75043148 Antisense, RP_051219_01_F08, Mouse strain C57BL/6J (56 days, male) 22.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.