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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:180.2 nTPM
HPA:180.2 nTPM
GTEx:236.8 nTPM
FANTOM5:42.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 180.2
Sample id Sample description nTPM
Amygdala
nTPM: 180.2
2514 Male, age 75, right hemisphere 190.9
2695 Female, age 67, right hemisphere 180.2
1987 Female, age 91, left hemisphere 178.7
2814 Male, age 76, right hemisphere 178.1
2517 Female, age 94, left hemisphere 173.0
Basal amygdala
nTPM: 166.9
2609 Male, age 75, right hemisphere 174.0
1955 Male, age 76, both hemispheres 171.4
2110 Male, age 80, left hemisphere 166.4
2685 Female, age 94, left hemisphere 165.4
2827 Female, age 67, right hemisphere 164.9
2243 Female, age 91, right hemisphere 159.4
Central amygdala
nTPM: 172.8
2826 Female, age 94, left hemisphere 180.9
2515 Male, age 75, right hemisphere 175.1
1905 Male, age 76, both hemispheres 175.0
2701 Female, age 91, right hemisphere 169.1
2239 Male, age 80, left hemisphere 163.7
Corticomedial amygdala
nTPM: 167.9
2428 Male, age 75, right hemisphere 186.6
2240 Male, age 76, both hemispheres 170.7
2429 Female, age 94, left hemisphere 167.6
2829 Male, age 80, left hemisphere 164.3
2242 Female, age 91, right hemisphere 161.3
2535 Female, age 67, right hemisphere 157.2
Lateral amygdala
nTPM: 171.4
2516 Male, age 75, right hemisphere 179.0
1883 Male, age 76, both hemispheres 175.1
2830 Female, age 67, right hemisphere 173.9
2534 Female, age 94, left hemisphere 169.7
2256 Male, age 80, left hemisphere 166.0
2255 Female, age 91, right hemisphere 164.6
Stria terminalis, bed nucleus
nTPM: 166.3
2201 Male, age 74, unknown 170.5
1974 Female, age 91, both hemispheres 166.3
2486 Female, age 94, both hemispheres 162.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 236.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 236.8
Samples: 152

Max nTPM: 540.2
Min nTPM: 116.7
Std nTPM: 72.3
Median nTPM: 224.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 540.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 517.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 481.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 457.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 444.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 402.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 392.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 371.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 360.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 348.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 336.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 329.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 329.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 327.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 321.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 320.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 318.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 313.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 313.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 311.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 298.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 297.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 295.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 292.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 290.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 290.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 287.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 284.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 279.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 275.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 274.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 274.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 274.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 272.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 269.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 266.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 266.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 266.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 263.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 262.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 262.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 261.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 261.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 260.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 259.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 257.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 256.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 254.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 254.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 252.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 252.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 251.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 247.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 246.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 244.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 243.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 241.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 240.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 239.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 239.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 238.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 238.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 236.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 236.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 236.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 235.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 233.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 233.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 231.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 230.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 230.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 229.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 228.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 227.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 227.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 224.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 224.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 221.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 220.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 218.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 217.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 217.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 217.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 216.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 214.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 212.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 212.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 212.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 211.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 211.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 210.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 209.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 209.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 209.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 207.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 207.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 207.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 206.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 206.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 204.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 203.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 203.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 202.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 201.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 200.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 200.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 199.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 198.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 198.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 198.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 197.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 197.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 197.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 196.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 195.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 193.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 192.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 191.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 191.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 191.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 191.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 188.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 188.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 183.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 182.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 181.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 178.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 176.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 175.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 174.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 173.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 172.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 169.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 168.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 167.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 164.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 162.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 161.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 158.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 157.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 147.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 146.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 145.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 142.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 140.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 135.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 132.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 126.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 124.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 121.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 118.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 116.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 42.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 42.2
FF:10151-102I7 76 years, female 42.2

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