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  • HMGN2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:188.7 nTPM
HPA:188.7 nTPM
GTEx:272.4 nTPM
FANTOM5:40.8 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 188.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 183.9
2048 Male, age 55, midline 197.3
1981 Female, age 72, midline 196.1
2816 Male, age 47, midline 180.8
2565 Male, age 75, midline 172.8
2194 Female, age 79, both hemispheres 172.6
Cervical spinal cord, dorsal horn
nTPM: 188.7
2296 Male, age 66, both hemispheres 200.1
2173 Female, age 72, unknown 198.8
2069 Male, age 47, both hemispheres 195.5
1877 Male, age 55, unknown 187.3
2297 Male, age 75, both hemispheres 179.1
2721 Male, age 90, both hemispheres 171.4
Cervical spinal cord, ventral horn
nTPM: 186.1
2098 Female, age 72, unknown 204.2
2480 Male, age 75, both hemispheres 192.5
2809 Male, age 90, both hemispheres 190.3
2295 Male, age 66, both hemispheres 183.3
2068 Male, age 55, unknown 177.0
2820 Female, age 79, both hemispheres 168.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 272.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 272.4
Samples: 159

Max nTPM: 440.7
Min nTPM: 113.0
Std nTPM: 62.5
Median nTPM: 268.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 440.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 430.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 429.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 428.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 400.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 396.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 388.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 387.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 381.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 380.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 377.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 375.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 372.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 365.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 361.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 356.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 350.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 349.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 346.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 338.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 338.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 336.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 335.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 333.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 332.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 328.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 327.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 325.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 324.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 324.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 319.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 318.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 318.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 315.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 315.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 313.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 313.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 312.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 311.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 310.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 308.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 307.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 307.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 306.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 305.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 304.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 302.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 302.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 302.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 299.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 298.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 296.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 294.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 294.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 293.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 293.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 289.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 288.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 288.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 287.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 287.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 286.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 284.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 283.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 282.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 282.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 282.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 282.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 281.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 280.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 280.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 280.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 279.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 279.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 278.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 275.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 274.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 272.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 271.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 268.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 266.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 264.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 263.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 262.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 262.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 261.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 261.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 260.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 260.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 260.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 259.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 258.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 256.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 256.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 255.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 254.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 254.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 254.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 254.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 253.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 253.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 251.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 251.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 251.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 249.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 248.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 246.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 245.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 244.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 244.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 242.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 242.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 241.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 238.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 238.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 237.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 237.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 235.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 231.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 230.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 229.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 229.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 228.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 225.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 225.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 225.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 223.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 223.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 220.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 217.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 216.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 216.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 215.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 213.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 211.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 207.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 204.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 204.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 203.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 201.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 199.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 199.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 199.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 194.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 194.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 194.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 188.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 187.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 182.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 177.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 170.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 167.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 164.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 159.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 146.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 140.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 136.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 134.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 113.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 40.8
FF:10181-103D1 60 years, female 46.9
FF:10159-103A6 76 years, female 34.7

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