BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:36.1 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:23.4 nTPM
Mouse:5.6 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.1
1857 Female, age 85, left hemisphere 42.9
2289 Male, age 61, right hemisphere 42.0
1854 Male, age 80, left hemisphere 40.4
2846 Female, age 79, unknown 35.8
2290 Female, age 72, unknown 34.8
2481 Female, age 94, left hemisphere 29.2
2288 Male, age 75, left hemisphere 29.1
1781 Male, age 74, unknown 26.8
Claustrum
nTPM: 24.4
2491 Male, age 75, both hemispheres 29.1
2392 Female, age 94, both hemispheres 27.9
2568 Male, age 61, both hemispheres 27.9
2284 Female, age 91, both hemispheres 24.6
2198 Male, age 80, both hemispheres 23.4
2645 Female, age 72, unknown 23.4
1956 Male, age 74, unknown 22.0
2196 Female, age 79, unknown 21.3
2292 Female, age 85, both hemispheres 20.0
Globus pallidus, externus
nTPM: 36.9
2646 Male, age 61, right hemisphere 48.8
2567 Female, age 72, unknown 40.3
1996 Male, age 80, right hemisphere 38.7
2395 Male, age 75, both hemispheres 29.7
2772 Female, age 79, unknown 27.0
Globus pallidus, internus
nTPM: 33.4
2037 Male, age 80, right hemisphere 42.9
1818 Male, age 74, unknown 35.6
2483 Female, age 94, right hemisphere 34.3
2111 Female, age 85, right hemisphere 33.4
2566 Female, age 72, unknown 32.2
2778 Female, age 91, both hemispheres 28.1
2287 Male, age 75, right hemisphere 27.2
Nucleus accumbens
nTPM: 31.3
2824 Male, age 61, right hemisphere 46.5
1806 Female, age 85, left hemisphere 32.5
1856 Female, age 91, right hemisphere 31.3
1783 Male, age 74, unknown 30.9
2391 Female, age 94, left hemisphere 28.9
2286 Male, age 75, left hemisphere 28.1
2732 Male, age 80, right hemisphere 26.9
2698 Female, age 72, unknown 25.3
Nucleus basalis of Meynert
nTPM: 43.7
2393 Male, age 80, right hemisphere 57.2
2569 Male, age 61, both hemispheres 54.2
2484 Female, age 94, left hemisphere 36.7
2821 Male, age 75, both hemispheres 26.7
Nucleus of the diagonal band
nTPM: 29.8
2029 Male, age 61, right hemisphere 33.9
2775 Male, age 80, right hemisphere 32.6
2195 Female, age 85, both hemispheres 31.4
1979 Male, age 74, unknown 28.8
1812 Female, age 91, both hemispheres 22.3
Olfactory tubercle
nTPM: 33.3
2856 Male, age 75, right hemisphere 36.4
1846 Male, age 80, right hemisphere 34.1
2487 Female, age 94, left hemisphere 32.9
1998 Female, age 91, both hemispheres 29.7
Putamen
nTPM: 42.9
2489 Female, age 72, unknown 52.4
1838 Male, age 80, right hemisphere 51.6
1829 Male, age 74, unknown 44.5
2466 Female, age 79, unknown 41.0
2647 Male, age 75, left hemisphere 40.5
2482 Female, age 94, left hemisphere 35.7
1937 Female, age 91, right hemisphere 34.4
Septal nuclei
nTPM: 31.5
2059 Female, age 85, both hemispheres 41.5
2199 Male, age 80, right hemisphere 39.6
1960 Male, age 74, unknown 29.3
2394 Male, age 61, left hemisphere 29.3
2629 Female, age 94, right hemisphere 28.7
2009 Female, age 91, both hemispheres 26.8
2031 Female, age 72, unknown 25.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.0
Samples: 246

Max nTPM: 66.3
Min nTPM: 3.4
Std nTPM: 11.8
Median nTPM: 29.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 66.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 59.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 57.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 56.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 54.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 54.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 53.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 51.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 49.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 49.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 49.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.4
Samples: 246

Max nTPM: 58.4
Min nTPM: 2.1
Std nTPM: 9.5
Median nTPM: 23.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 58.4
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 56.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 53.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 51.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 50.5
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 46.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 45.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 45.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 42.3
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 42.3
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 41.7
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Brain - Putamen (basal ganglia)
Average nTPM: 36.1
Samples: 205

Max nTPM: 72.9
Min nTPM: 8.6
Std nTPM: 12.6
Median nTPM: 35.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 72.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 67.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 67.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 66.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 65.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 64.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 64.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 62.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 60.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 58.1
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 58.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 40.3
FF:10164-103B2 76 years, female 40.3
Globus pallidus
Scaled Tags Per Million: 40.6
FF:10175-103C4 60 years, female 49.7
FF:10161-103A8 76 years, female 31.6
Nucleus accumbens
Scaled Tags Per Million: 54.9
FF:10037-101F1 23-56 years, mixed 54.9
Putamen
Scaled Tags Per Million: 42.1
FF:10176-103C5 60 years, female 42.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.4
Pig sample Sample description nTPM
Caudate
nTPM: 21.6
Samples: 4

Max nTPM: 28.0
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 22.9
Sample C Male 24.6
Sample D Male 28.0
Putamen
nTPM: 23.4
Samples: 4

Max nTPM: 35.8
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 35.8
Sample C Male 25.0
Sample D Male 28.0
Septum
nTPM: 9.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 3.4
Sample A Female 8.5
Sample B Female 16.0
Sample C Male 3.4
Sample D Male 9.6
Ventral pallidum
nTPM: 15.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 5.2
Sample A Female 21.7
Sample B Female 17.2
Sample C Male 5.2
Sample D Male 18.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.6
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.0
Sample A Male 5.7
Sample B Male 6.0
Sample C Female 5.8
Sample D Female 5.0
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Male 1.8
Sample B Male 1.8
Sample C Female 1.5
Sample D Female 2.5
Ventral forebrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.1
Sample A Male 3.9
Sample B Male 3.3
Sample C Female 2.1
Sample D Female 3.7

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The Human Protein Atlas

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