MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:15.7 nTPM
FANTOM5:22.5 Scaled Tags Per Million
Pig:4.8 nTPM
Mouse:2.1 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
2019 Male, age 18, unknown 36.1
2828 Female, age 72, unknown 29.9
2586 Male, age 75, left hemisphere 27.2
1833 Male, age 53, unknown 26.9
1830 Male, age 51, unknown 26.7
1827 Male, age 72, unknown 26.1
1870 Female, age 42, unknown 25.5
2411 Female, age 72, unknown 25.5
2666 Male, age 74, left hemisphere 23.7
2219 Male, age 76, both hemispheres 22.3
Dorsal raphe nucleus
nTPM: 29.9
2016 Female, age 72, unknown 36.2
1828 Male, age 53, unknown 34.0
2047 Male, age 72, unknown 31.1
2298 Female, age 72, unknown 25.2
2750 Male, age 76, both hemispheres 22.9
Inferior colliculus
nTPM: 27.4
1848 Female, age 42, unknown 28.8
2849 Male, age 72, unknown 27.6
1890 Male, age 53, unknown 27.4
2097 Female, age 72, unknown 25.7
Median raphe nucleus
nTPM: 25.1
2220 Male, age 76, midline 25.1
Pedunculopontine tegmental nucleus
nTPM: 25.8
2334 Male, age 80, both hemispheres 27.1
1921 Female, age 85, both hemispheres 26.6
2338 Male, age 61, both hemispheres 23.7
Periaquaductal grey, anterior
nTPM: 20.3
1795 Male, age 51, unknown 23.6
1947 Male, age 18, unknown 19.3
2502 Female, age 75, unknown 18.2
Periaquaductal grey, dorsal
nTPM: 27.5
2850 Male, age 76, both hemispheres 29.5
2464 Female, age 72, unknown 27.3
1831 Male, age 72, unknown 26.8
1840 Male, age 53, unknown 26.4
Periaquaductal grey, lateral
nTPM: 30.2
2140 Male, age 76, both hemispheres 33.0
2272 Male, age 74, both hemispheres 29.6
2053 Male, age 18, unknown 27.9
Pretectal area
nTPM: 28.8
2273 Male, age 74, both hemispheres 34.2
1944 Female, age 72, unknown 32.4
1817 Female, age 42, unknown 31.4
2316 Male, age 76, right hemisphere 31.2
2224 Female, age 72, unknown 30.6
2667 Female, age 75, unknown 28.8
1815 Male, age 53, unknown 27.2
2007 Male, age 72, unknown 26.6
1816 Male, age 51, unknown 25.6
2407 Male, age 75, both hemispheres 24.3
2825 Male, age 18, unknown 23.9
Red nucleus
nTPM: 29.0
2588 Male, age 74, left hemisphere 32.7
2785 Male, age 18, unknown 32.3
1954 Female, age 42, unknown 30.5
2725 Female, age 75, unknown 29.9
2769 Male, age 72, unknown 29.8
2503 Female, age 72, unknown 29.6
2227 Male, age 72, unknown 29.4
2823 Male, age 76, right hemisphere 29.0
1821 Female, age 72, unknown 28.7
1904 Male, age 53, unknown 27.7
1865 Male, age 51, unknown 27.4
2584 Male, age 75, left hemisphere 20.4
Substantia nigra
nTPM: 28.4
2409 Female, age 72, unknown 31.7
1916 Female, age 42, unknown 31.2
2583 Male, age 75, right hemisphere 30.7
2590 Female, age 75, unknown 30.0
2699 Male, age 18, unknown 27.7
1889 Female, age 72, unknown 27.2
1851 Male, age 51, unknown 27.0
2241 Male, age 72, unknown 26.7
1941 Male, age 53, unknown 26.1
2665 Male, age 74, both hemispheres 25.4
Superior colliculus
nTPM: 26.1
2087 Female, age 72, unknown 31.8
1796 Male, age 53, unknown 27.4
1995 Male, age 72, unknown 26.7
2668 Female, age 75, unknown 26.7
1839 Male, age 51, unknown 26.1
2587 Male, age 74, left hemisphere 25.2
1895 Male, age 76, right hemisphere 25.1
2261 Male, age 18, unknown 24.2
2664 Male, age 75, both hemispheres 24.0
1913 Female, age 42, unknown 23.3
Ventral tegmental area
nTPM: 27.3
2410 Female, age 72, unknown 30.4
1915 Female, age 42, unknown 28.8
2218 Male, age 76, both hemispheres 27.8
2021 Male, age 53, unknown 26.7
1942 Male, age 51, unknown 26.6
2223 Female, age 72, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 74.3
Min nTPM: 1.3
Std nTPM: 10.6
Median nTPM: 13.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 74.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 69.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 40.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 38.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 34.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 33.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 32.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 30.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 29.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 28.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.5
FF:10158-103A5 76 years, female 22.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.8
Pig sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 5.5
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 3.4
Sample C Male 5.5
Sample D Male 3.2
Periaqueductal gray
nTPM: 3.3
Samples: 3

Max nTPM: 3.4
Min nTPM: 3.2
Sample B Female 3.2
Sample C Male 3.4
Sample D Male 3.3
Substantia nigra
nTPM: 2.3
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 2.3
Sample C Male 2.6
Sample D Male 3.2
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 8.8
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 5.4
Sample C Male 8.8
Sample D Male 3.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.6
Sample A Male 1.6
Sample B Male 2.5
Sample C Female 2.0
Sample D Female 2.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.