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MT-ND3
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:85648.8 nTPM
HPA:85648.8 nTPM
Pig:20827.6 nTPM
Allen mouse:0.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 85648.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 77639.8
2301 Female, age 85, both hemispheres 89685.2
2188 Female, age 91, both hemispheres 78108.9
1984 Male, age 76, both hemispheres 72075.4
2090 Male, age 80, both hemispheres 70689.6
Dorsal cochlear nucleus
nTPM: 78519.9
2378 Male, age 80, both hemispheres 86175.8
2802 Male, age 74, right hemisphere 81699.9
2187 Female, age 91, both hemispheres 76970.8
2370 Male, age 61, both hemispheres 74178.6
2058 Male, age 76, both hemispheres 73574.3
Dorsal tegmental nucleus
nTPM: 76867.0
2358 Male, age 61, both hemispheres 85282.9
1936 Male, age 76, left hemisphere 75651.6
2083 Male, age 80, both hemispheres 73818.9
2326 Male, age 74, both hemispheres 72714.6
Dorsolateral tegmental area
nTPM: 72388.1
2141 Male, age 76, both hemispheres 77441.5
2337 Male, age 61, both hemispheres 73898.9
2654 Male, age 80, both hemispheres 73390.3
2751 Female, age 85, both hemispheres 69139.3
2360 Male, age 74, both hemispheres 68070.6
Kolliker-Fuse nucleus
nTPM: 78705.6
2793 Female, age 91, left hemisphere 90862.6
2163 Male, age 80, both hemispheres 77498.5
2315 Male, age 76, right hemisphere 67755.7
Lateral lemniscal nuclei
nTPM: 75126.2
2320 Female, age 91, left hemisphere 81101.2
2169 Male, age 76, both hemispheres 78990.6
2453 Male, age 74, right hemisphere 77678.7
2036 Male, age 80, both hemispheres 70716.0
2746 Female, age 85, left hemisphere 67144.3
Lateral parabrachial nucleus
nTPM: 72076.8
2792 Male, age 76, both hemispheres 76553.8
2790 Male, age 61, both hemispheres 73439.2
2139 Female, age 85, right hemisphere 69735.0
2013 Male, age 80, both hemispheres 68579.2
Lateral vestibular nucleus
nTPM: 85648.8
2184 Male, age 76, both hemispheres 89331.5
2311 Male, age 80, both hemispheres 81966.0
Locus coeruleus
nTPM: 75967.1
2720 Male, age 74, both hemispheres 90919.0
2162 Male, age 80, both hemispheres 79430.5
2788 Male, age 74, unknown 78085.6
2317 Female, age 72, unknown 72407.5
2014 Male, age 55, unknown 71087.8
1980 Male, age 76, both hemispheres 71075.3
2123 Female, age 91, both hemispheres 68764.2
Medial olivary nucleus
nTPM: 73425.9
2851 Male, age 80, both hemispheres 88524.9
2138 Female, age 91, both hemispheres 69704.5
1962 Male, age 76, both hemispheres 68095.6
1943 Male, age 61, both hemispheres 67378.4
Medial parabrachial nucleus
nTPM: 75645.3
2854 Male, age 80, both hemispheres 86708.7
2786 Male, age 76, both hemispheres 77776.0
2156 Male, age 61, both hemispheres 74994.4
2170 Female, age 91, both hemispheres 72373.6
2463 Female, age 85, right hemisphere 66374.0
Medial periolivary nuclei
nTPM: 74743.8
2458 Female, age 91, both hemispheres 88673.6
2171 Female, age 85, both hemispheres 77178.3
2063 Male, age 76, both hemispheres 69882.6
2081 Male, age 80, both hemispheres 69604.4
2791 Male, age 74, right hemisphere 68380.1
Motor facial nucleus
nTPM: 84197.4
2795 Female, age 91, both hemispheres 101068.1
2697 Female, age 85, both hemispheres 100293.0
2327 Male, age 80, both hemispheres 92514.5
2365 Male, age 74, right hemisphere 71287.0
2062 Male, age 76, both hemispheres 70015.7
2126 Male, age 61, both hemispheres 70006.1
Motor trigeminal nucleus
nTPM: 76400.4
2321 Female, age 91, both hemispheres 84603.1
2309 Male, age 76, both hemispheres 76308.6
2335 Male, age 61, both hemispheres 75607.5
2560 Male, age 74, both hemispheres 73855.3
2079 Male, age 80, both hemispheres 71627.4
Nuclei of the trapezoid body
nTPM: 74400.8
2368 Female, age 91, both hemispheres 82605.3
2166 Male, age 80, both hemispheres 77661.5
1983 Male, age 76, both hemispheres 72502.0
2159 Male, age 61, both hemispheres 69949.6
2735 Female, age 85, both hemispheres 69285.3
Paramedian reticular nucleus
nTPM: 73666.2
2052 Male, age 76, both hemispheres 75909.3
2313 Male, age 61, both hemispheres 75878.1
2050 Female, age 85, both hemispheres 74843.5
2057 Male, age 80, both hemispheres 68033.8
Pontine nuclei
nTPM: 70701.4
2319 Female, age 91, both hemispheres 77120.7
2787 Female, age 85, both hemispheres 72856.0
2454 Male, age 74, left hemisphere 71044.7
1863 Male, age 55, unknown 70802.4
2115 Male, age 80, left hemisphere 70129.3
1968 Male, age 76, left hemisphere 69860.5
2109 Female, age 72, unknown 67499.3
2727 Male, age 61, right hemisphere 66298.1
Pontine raphe nucleus
nTPM: 74360.1
2853 Male, age 76, midline 77798.1
2122 Female, age 85, midline 70922.2
Posteroventral cochlear nucleus
nTPM: 73447.0
2341 Male, age 80, both hemispheres 80507.5
2371 Male, age 61, both hemispheres 76024.0
2752 Female, age 85, both hemispheres 70763.8
2135 Female, age 91, both hemispheres 70678.1
2070 Male, age 76, both hemispheres 69261.9
Principal sensory trigeminal nucleus
nTPM: 79778.4
2324 Male, age 76, both hemispheres 96142.6
2367 Female, age 91, left hemisphere 83891.9
2158 Male, age 61, both hemispheres 70006.1
2008 Male, age 80, left hemisphere 69072.8
Reticular pontine nucleus, caudal
nTPM: 80002.9
2332 Male, age 80, right hemisphere 88089.1
2457 Female, age 91, both hemispheres 87282.0
2559 Male, age 74, both hemispheres 73104.5
2092 Male, age 76, both hemispheres 71536.0
Reticular pontine nucleus, oral
nTPM: 75871.0
2366 Female, age 91, both hemispheres 90577.4
2167 Male, age 76, both hemispheres 79691.0
1939 Male, age 80, both hemispheres 71524.0
2361 Male, age 74, both hemispheres 68901.3
2012 Female, age 85, both hemispheres 68661.1
Reticulotegmental nucleus
nTPM: 85383.2
2322 Female, age 91, both hemispheres 92461.6
2333 Male, age 80, both hemispheres 87109.8
2325 Male, age 76, both hemispheres 83934.2
2452 Male, age 74, both hemispheres 78027.0
Spinal trigeminal nucleus, oral
nTPM: 78442.2
2164 Male, age 80, both hemispheres 92186.0
1978 Male, age 76, both hemispheres 73165.9
2737 Female, age 85, both hemispheres 69974.8
Subcoeruleus area
nTPM: 73327.9
1958 Male, age 80, both hemispheres 75947.3
2323 Female, age 91, left hemisphere 75497.6
2451 Male, age 74, both hemispheres 73945.1
2089 Male, age 76, left hemisphere 71894.3
2369 Female, age 85, left hemisphere 69355.3
Superior olive
nTPM: 76297.9
2561 Female, age 91, both hemispheres 89922.4
2329 Male, age 80, right hemisphere 84347.3
2020 Male, age 76, both hemispheres 70318.9
1875 Female, age 85, both hemispheres 69058.6
2364 Male, age 74, right hemisphere 67842.1
Superior vestibular nucleus
nTPM: 70722.1
2383 Male, age 74, both hemispheres 70830.2
2015 Male, age 80, both hemispheres 70696.5
2061 Male, age 76, both hemispheres 70639.7
Ventral periolivary nuclei
nTPM: 76289.4
2794 Female, age 91, left hemisphere 84428.8
2165 Male, age 80, both hemispheres 81126.5
2130 Female, age 85, both hemispheres 71346.5
2023 Male, age 76, both hemispheres 68256.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 79733.4
2840 Female, age 85, both hemispheres 89479.5
2456 Female, age 91, both hemispheres 82297.2
2161 Male, age 80, both hemispheres 78754.2
2359 Male, age 61, both hemispheres 78406.3
1959 Male, age 76, both hemispheres 75984.1
2449 Male, age 74, both hemispheres 73478.8

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 20827.6
Pig sample Sample description nTPM
Pons
nTPM: 20827.6
Samples: 4

Max nTPM: 27721.5
Min nTPM: 12311.0
Sample A Female 20134.9
Sample B Female 12311.0
Sample C Male 23142.9
Sample D Male 27721.5

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.0
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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