MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83678.9 nTPM
HPA:83678.9 nTPM
GTEx:66118.2 nTPM
Pig:17331.7 nTPM
Mouse:5530.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83678.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77243.6
2586 Male, age 75, left hemisphere 85353.5
2219 Male, age 76, both hemispheres 83720.9
2666 Male, age 74, left hemisphere 83519.7
2828 Female, age 72, unknown 78390.3
1870 Female, age 42, unknown 77884.5
1833 Male, age 53, unknown 76388.5
1830 Male, age 51, unknown 75285.9
1827 Male, age 72, unknown 71788.7
2019 Male, age 18, unknown 70499.8
2411 Female, age 72, unknown 69604.5
Dorsal raphe nucleus
nTPM: 70991.2
1828 Male, age 53, unknown 74126.5
2047 Male, age 72, unknown 72209.3
2750 Male, age 76, both hemispheres 71376.5
2016 Female, age 72, unknown 70529.1
2298 Female, age 72, unknown 66714.5
Inferior colliculus
nTPM: 76283.4
2849 Male, age 72, unknown 88677.6
1890 Male, age 53, unknown 75335.0
1848 Female, age 42, unknown 73428.7
2097 Female, age 72, unknown 67692.4
Median raphe nucleus
nTPM: 83678.9
2220 Male, age 76, midline 83678.9
Pedunculopontine tegmental nucleus
nTPM: 76212.6
2334 Male, age 80, both hemispheres 79623.7
2338 Male, age 61, both hemispheres 78212.8
1921 Female, age 85, both hemispheres 70801.3
Periaquaductal grey, anterior
nTPM: 70886.4
2502 Female, age 75, unknown 72416.1
1795 Male, age 51, unknown 70610.8
1947 Male, age 18, unknown 69632.3
Periaquaductal grey, dorsal
nTPM: 75913.7
2850 Male, age 76, both hemispheres 86798.4
1831 Male, age 72, unknown 73202.5
2464 Female, age 72, unknown 71868.1
1840 Male, age 53, unknown 71786.0
Periaquaductal grey, lateral
nTPM: 70291.6
2140 Male, age 76, both hemispheres 71941.6
2053 Male, age 18, unknown 71471.1
2272 Male, age 74, both hemispheres 67462.1
Pretectal area
nTPM: 74435.3
1944 Female, age 72, unknown 80279.5
2667 Female, age 75, unknown 79405.3
1816 Male, age 51, unknown 77819.0
1817 Female, age 42, unknown 77614.1
2825 Male, age 18, unknown 75838.1
1815 Male, age 53, unknown 75772.8
2007 Male, age 72, unknown 74683.0
2407 Male, age 75, both hemispheres 72652.4
2224 Female, age 72, unknown 69391.8
2316 Male, age 76, right hemisphere 68027.2
2273 Male, age 74, both hemispheres 67305.6
Red nucleus
nTPM: 76521.7
2503 Female, age 72, unknown 80582.6
2588 Male, age 74, left hemisphere 79688.2
2584 Male, age 75, left hemisphere 78918.9
1865 Male, age 51, unknown 78900.1
1954 Female, age 42, unknown 78492.9
2823 Male, age 76, right hemisphere 78094.9
2785 Male, age 18, unknown 75915.7
1904 Male, age 53, unknown 74685.0
2227 Male, age 72, unknown 74224.9
2769 Male, age 72, unknown 73935.8
2725 Female, age 75, unknown 73600.8
1821 Female, age 72, unknown 71221.0
Substantia nigra
nTPM: 76249.0
2699 Male, age 18, unknown 87977.1
2665 Male, age 74, both hemispheres 85691.7
1916 Female, age 42, unknown 78944.7
1941 Male, age 53, unknown 75370.2
1889 Female, age 72, unknown 74926.4
2583 Male, age 75, right hemisphere 73812.4
2241 Male, age 72, unknown 73751.3
1851 Male, age 51, unknown 71042.9
2590 Female, age 75, unknown 70649.7
2409 Female, age 72, unknown 70323.8
Superior colliculus
nTPM: 74196.2
2664 Male, age 75, both hemispheres 83906.4
2587 Male, age 74, left hemisphere 76899.0
1913 Female, age 42, unknown 74243.5
2087 Female, age 72, unknown 74145.0
2668 Female, age 75, unknown 73832.6
1895 Male, age 76, right hemisphere 73296.6
1839 Male, age 51, unknown 72431.7
1995 Male, age 72, unknown 71657.1
1796 Male, age 53, unknown 71253.9
2261 Male, age 18, unknown 70295.8
Ventral tegmental area
nTPM: 74258.9
2218 Male, age 76, both hemispheres 80721.3
2223 Female, age 72, unknown 76456.5
1942 Male, age 51, unknown 74324.0
1915 Female, age 42, unknown 72869.5
2021 Male, age 53, unknown 72027.3
2410 Female, age 72, unknown 69154.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66118.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66118.2
Samples: 139

Max nTPM: 194524.7
Min nTPM: 12977.1
Std nTPM: 42172.1
Median nTPM: 53099.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 194524.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 193890.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 190022.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 181209.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 179572.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 177411.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 167512.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 166878.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 159958.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 158253.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 153198.2
Show allShow less

MIDBRAIN - Pig RNA-seqi
Average nTPM 17331.7
Pig sample Sample description nTPM
Midbrain
nTPM: 17331.7
Samples: 4

Max nTPM: 26526.7
Min nTPM: 10408.6
Sample A Female 14197.9
Sample B Female 26526.7
Sample C Male 18193.5
Sample D Male 10408.6
Periaqueductal gray
nTPM: 13472.4
Samples: 3

Max nTPM: 15068.0
Min nTPM: 10574.7
Sample B Female 14774.5
Sample C Male 15068.0
Sample D Male 10574.7
Substantia nigra
nTPM: 12748.8
Samples: 4

Max nTPM: 16300.7
Min nTPM: 7537.1
Sample A Female 15302.8
Sample B Female 11854.5
Sample C Male 16300.7
Sample D Male 7537.1
Superior colliculi
nTPM: 13559.4
Samples: 4

Max nTPM: 18993.8
Min nTPM: 2211.8
Sample A Female 16743.2
Sample B Female 2211.8
Sample C Male 18993.8
Sample D Male 16288.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5530.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5530.2
Samples: 4

Max nTPM: 6545.2
Min nTPM: 4677.0
Sample A Male 4927.5
Sample B Male 4677.0
Sample C Female 5971.2
Sample D Female 6545.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73949734 Antisense, RP_051219_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.