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R3HDM4
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:45.5 nTPM
HPA:23.9 nTPM
GTEx:45.5 nTPM
FANTOM5:36.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA043025Antibody HPA048638
Glandular cells MediumHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 23.9
overview
Male, age 65
Small intestine sample 232
nTPM: 21.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 22.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 25.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 26.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 45.5
Samples: 187

Max nTPM: 140.7
Min nTPM: 16.8
Std nTPM: 16.7
Median nTPM: 42.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 140.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 93.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 90.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 86.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 80.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 78.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 78.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 77.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 74.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 72.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 72.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 69.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 68.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 68.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 66.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 66.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 66.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 66.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 66.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 65.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 65.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 65.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 64.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 63.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 62.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 62.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 62.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 62.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 62.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 62.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 62.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 62.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 61.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 61.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 61.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 61.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 59.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 59.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 59.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 59.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 58.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 58.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 58.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 58.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 57.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 57.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 56.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 56.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 56.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 55.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 54.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 54.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 54.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 53.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 53.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 53.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 53.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 52.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 52.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 52.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 52.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 52.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 52.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 52.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 50.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 49.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 49.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 48.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 48.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 48.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 47.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 47.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 47.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 46.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 46.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 46.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 45.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 45.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 45.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 45.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 44.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 44.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 44.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 43.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 43.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 43.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 43.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 42.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 42.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 42.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 42.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 42.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 42.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 42.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 41.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 41.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 41.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 41.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 41.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 41.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 41.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 40.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 40.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 40.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 40.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 39.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 39.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 39.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 39.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 39.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 39.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 39.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 38.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 38.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 38.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 37.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 37.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 37.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 36.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 36.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 36.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 36.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 36.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 36.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 35.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 35.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 35.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 35.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 35.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 35.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 35.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 34.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 34.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 34.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 34.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 34.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 33.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 33.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 33.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 33.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 33.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 33.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 32.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 32.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 32.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 32.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 32.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 32.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 31.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 31.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 31.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 31.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 31.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 31.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 30.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 30.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 30.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 29.8
GTEX-1192X-2526-SM-59868 50-59 years, male 29.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 29.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 29.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 28.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 28.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 28.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 28.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 28.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 28.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 28.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 27.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 27.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 26.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 26.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 26.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 25.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 25.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 25.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 24.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 24.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 24.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 23.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 23.6
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 23.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 22.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 21.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 20.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 19.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 16.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 36.5
FF:10024-101D6 15,40,85 years, mixed 36.5

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