MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80705.7 nTPM
HPA:80705.7 nTPM
GTEx:95253.6 nTPM
Pig:28507.8 nTPM
Mouse:23929.1 nTPM
Allen mouse:24.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80705.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74765.3
2586 Male, age 75, left hemisphere 88246.0
2219 Male, age 76, both hemispheres 86764.6
2666 Male, age 74, left hemisphere 79493.3
2828 Female, age 72, unknown 78408.4
1833 Male, age 53, unknown 73595.3
1830 Male, age 51, unknown 72040.3
1870 Female, age 42, unknown 71612.7
1827 Male, age 72, unknown 67637.0
2019 Male, age 18, unknown 66491.5
2411 Female, age 72, unknown 63363.7
Dorsal raphe nucleus
nTPM: 65304.0
1828 Male, age 53, unknown 72340.5
2047 Male, age 72, unknown 66838.9
2750 Male, age 76, both hemispheres 65291.4
2016 Female, age 72, unknown 63675.1
2298 Female, age 72, unknown 58373.9
Inferior colliculus
nTPM: 71113.3
2849 Male, age 72, unknown 85582.9
1890 Male, age 53, unknown 70196.0
1848 Female, age 42, unknown 68326.8
2097 Female, age 72, unknown 60347.3
Median raphe nucleus
nTPM: 80705.7
2220 Male, age 76, midline 80705.7
Pedunculopontine tegmental nucleus
nTPM: 72869.1
2334 Male, age 80, both hemispheres 78857.9
2338 Male, age 61, both hemispheres 75641.8
1921 Female, age 85, both hemispheres 64107.6
Periaquaductal grey, anterior
nTPM: 64900.5
2502 Female, age 75, unknown 67312.0
1795 Male, age 51, unknown 64056.6
1947 Male, age 18, unknown 63332.8
Periaquaductal grey, dorsal
nTPM: 70920.8
2850 Male, age 76, both hemispheres 83092.1
1831 Male, age 72, unknown 68657.6
2464 Female, age 72, unknown 67496.9
1840 Male, age 53, unknown 64436.6
Periaquaductal grey, lateral
nTPM: 63451.2
2140 Male, age 76, both hemispheres 66279.4
2053 Male, age 18, unknown 64217.9
2272 Male, age 74, both hemispheres 59856.3
Pretectal area
nTPM: 70283.2
1817 Female, age 42, unknown 77716.8
2667 Female, age 75, unknown 77276.8
1816 Male, age 51, unknown 76881.5
1944 Female, age 72, unknown 76830.8
1815 Male, age 53, unknown 74081.8
2007 Male, age 72, unknown 73255.4
2825 Male, age 18, unknown 70588.8
2407 Male, age 75, both hemispheres 65953.5
2224 Female, age 72, unknown 61600.2
2316 Male, age 76, right hemisphere 60028.8
2273 Male, age 74, both hemispheres 58900.9
Red nucleus
nTPM: 72500.6
2588 Male, age 74, left hemisphere 78655.2
2503 Female, age 72, unknown 77518.3
2584 Male, age 75, left hemisphere 76979.4
2823 Male, age 76, right hemisphere 75114.0
1954 Female, age 42, unknown 74037.3
1865 Male, age 51, unknown 72240.9
2785 Male, age 18, unknown 71247.2
2227 Male, age 72, unknown 70546.1
2769 Male, age 72, unknown 69938.8
1904 Male, age 53, unknown 68862.3
1821 Female, age 72, unknown 67716.2
2725 Female, age 75, unknown 67151.6
Substantia nigra
nTPM: 72694.8
2665 Male, age 74, both hemispheres 88798.3
2699 Male, age 18, unknown 87696.4
1916 Female, age 42, unknown 78101.7
1941 Male, age 53, unknown 72593.8
1889 Female, age 72, unknown 70310.9
2583 Male, age 75, right hemisphere 69959.3
1851 Male, age 51, unknown 66305.4
2590 Female, age 75, unknown 65568.1
2241 Male, age 72, unknown 64023.8
2409 Female, age 72, unknown 63590.8
Superior colliculus
nTPM: 69174.7
2664 Male, age 75, both hemispheres 81559.6
2587 Male, age 74, left hemisphere 71734.9
2087 Female, age 72, unknown 70104.5
2668 Female, age 75, unknown 68686.6
1913 Female, age 42, unknown 68398.4
1839 Male, age 51, unknown 68056.6
1895 Male, age 76, right hemisphere 67075.9
1995 Male, age 72, unknown 66902.8
1796 Male, age 53, unknown 64796.8
2261 Male, age 18, unknown 64431.3
Ventral tegmental area
nTPM: 70206.2
2218 Male, age 76, both hemispheres 79720.3
2223 Female, age 72, unknown 73006.1
1942 Male, age 51, unknown 69812.1
1915 Female, age 42, unknown 67069.7
2021 Male, age 53, unknown 66578.0
2410 Female, age 72, unknown 65050.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 95253.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95253.6
Samples: 139

Max nTPM: 314273.7
Min nTPM: 16042.8
Std nTPM: 59814.6
Median nTPM: 74854.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 314273.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 295951.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 265334.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 251247.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 242994.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 222087.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 220914.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 215752.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 212399.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 204741.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 200584.5
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MIDBRAIN - Pig RNA-seqi
Average nTPM 28507.8
Pig sample Sample description nTPM
Midbrain
nTPM: 28507.9
Samples: 4

Max nTPM: 38273.7
Min nTPM: 21534.5
Sample A Female 21534.5
Sample B Female 38273.7
Sample C Male 30966.8
Sample D Male 23256.5
Periaqueductal gray
nTPM: 21208.7
Samples: 3

Max nTPM: 23561.5
Min nTPM: 18229.2
Sample B Female 21835.3
Sample C Male 23561.5
Sample D Male 18229.2
Substantia nigra
nTPM: 24137.1
Samples: 4

Max nTPM: 32301.8
Min nTPM: 15254.7
Sample A Female 32301.8
Sample B Female 21282.1
Sample C Male 27709.9
Sample D Male 15254.7
Superior colliculi
nTPM: 23999.0
Samples: 4

Max nTPM: 30884.0
Min nTPM: 8565.1
Sample A Female 30155.8
Sample B Female 8565.1
Sample C Male 30884.0
Sample D Male 26391.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23929.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 23929.1
Samples: 4

Max nTPM: 25055.6
Min nTPM: 23029.0
Sample A Male 25055.6
Sample B Male 23928.8
Sample C Female 23702.8
Sample D Female 23029.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 24.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.3
74357755 Antisense, RP_051219_04_A04, Mouse strain C57BL/6J (56 days, male) 24.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.