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RPL39
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2121.3 nTPM
HPA:1275.9 nTPM
GTEx:2121.3 nTPM
FANTOM5:35.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA047105
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1275.9
overview
Male, age 65
Small intestine sample 232
nTPM: 1652.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1258
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1078.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1114.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2121.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2121.3
Samples: 187

Max nTPM: 5468.5
Min nTPM: 922.2
Std nTPM: 823.8
Median nTPM: 1919.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5468.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4953.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4621.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4570.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4360.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4315.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 4066.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3911.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3897.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3859.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3858.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3792.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3713.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 3557.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 3407.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3292.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3270.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3239.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3178.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3096.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3067.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 3045.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3019.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3014.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3011.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2978.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2971.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2926.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2861.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2837.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2813.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2809.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2743.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2734.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2722.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2695.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2669.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2655.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2643.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2620.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2602.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2576.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2560.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2547.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2519.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 2496.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2495.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2484.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2472.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2470.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2460.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2447.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2418.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2398.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2383.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2376.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2374.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2372.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2359.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2356.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2356.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2353.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2339.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2337.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2315.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2303.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2301.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2254.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2248.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2241.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2216.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2183.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2145.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2131.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2128.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2127.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2113.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2107.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2087.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2077.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2068.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2045.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2026.5
GTEX-1192X-2526-SM-59868 50-59 years, male 2025.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2012.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1994.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1991.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1987.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1981.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1961.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1928.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1925.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1919.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1919.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1912.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1896.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1891.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1883.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1883.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1877.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1846.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1832.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1817.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1802.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1799.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1788.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1788.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1783.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1772.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1771.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1770.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1753.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1724.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1722.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1715.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1714.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1711.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1698.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1690.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1682.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1679.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1678.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1677.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1672.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1668.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1665.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1640.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1630.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1627.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1615.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1613.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1605.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1599.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1568.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1564.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1548.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1535.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1527.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1502.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1498.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1489.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1485.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1479.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1477.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1459.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1457.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1454.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1450.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1445.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1441.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1434.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1425.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1410.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1403.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1383.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1378.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1374.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1371.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1370.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1367.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1367.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1367.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1358.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1352.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1344.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1343.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1317.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 1311.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1301.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1300.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1298.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1286.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1268.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1260.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1249.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1245.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1205.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1164.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1138.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1127.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1109.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1107.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1096.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1087.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 977.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 968.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 922.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 35.9
FF:10024-101D6 15,40,85 years, mixed 35.9

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