BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:10.2 nTPM
HPA:10.2 nTPM
GTEx:18.6 nTPM
FANTOM5:141.7 Scaled Tags Per Million
Mouse:127.6 nTPM
Allen mouse:9.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003047
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.6
1857 Female, age 85, left hemisphere 5.7
2288 Male, age 75, left hemisphere 5.1
2846 Female, age 79, unknown 5.0
2290 Female, age 72, unknown 4.9
1854 Male, age 80, left hemisphere 3.4
1781 Male, age 74, unknown 3.3
2289 Male, age 61, right hemisphere 1.3
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 2.9
2284 Female, age 91, both hemispheres 7.4
2568 Male, age 61, both hemispheres 5.2
2198 Male, age 80, both hemispheres 3.9
2491 Male, age 75, both hemispheres 3.9
2392 Female, age 94, both hemispheres 2.5
2645 Female, age 72, unknown 1.5
1956 Male, age 74, unknown 1.3
2196 Female, age 79, unknown 0.5
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 5.3
1856 Female, age 91, right hemisphere 13.6
2824 Male, age 61, right hemisphere 11.8
1783 Male, age 74, unknown 5.9
1806 Female, age 85, left hemisphere 5.7
2286 Male, age 75, left hemisphere 3.5
2698 Female, age 72, unknown 2.2
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.7
2484 Female, age 94, left hemisphere 2.3
2393 Male, age 80, right hemisphere 0.7
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 10.2
1812 Female, age 91, both hemispheres 12.3
2029 Male, age 61, right hemisphere 12.1
2195 Female, age 85, both hemispheres 10.5
2775 Male, age 80, right hemisphere 10.5
1979 Male, age 74, unknown 5.4
Olfactory tubercle
nTPM: 8.6
1998 Female, age 91, both hemispheres 13.0
2487 Female, age 94, left hemisphere 8.6
1846 Male, age 80, right hemisphere 6.9
2856 Male, age 75, right hemisphere 6.1
Putamen
nTPM: 3.2
1937 Female, age 91, right hemisphere 7.7
1838 Male, age 80, right hemisphere 5.9
2466 Female, age 79, unknown 5.6
1829 Male, age 74, unknown 3.1
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 5.8
1960 Male, age 74, unknown 11.4
2031 Female, age 72, unknown 11.0
2009 Female, age 91, both hemispheres 8.5
2629 Female, age 94, right hemisphere 7.3
2059 Female, age 85, both hemispheres 2.9
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.8
Samples: 246

Max nTPM: 34.7
Min nTPM: 2.6
Std nTPM: 8.6
Median nTPM: 15.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 34.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 34.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 32.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 32.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 32.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 32.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 32.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 31.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 31.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 30.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 30.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.6
Samples: 246

Max nTPM: 41.7
Min nTPM: 1.8
Std nTPM: 9.1
Median nTPM: 19.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 41.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 39.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 36.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 36.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 36.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 36.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 34.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 34.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 34.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 34.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 33.6
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Brain - Putamen (basal ganglia)
Average nTPM: 13.9
Samples: 205

Max nTPM: 32.1
Min nTPM: 1.9
Std nTPM: 7.8
Median nTPM: 13.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 32.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 31.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 29.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 29.4
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 29.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 29.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 28.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 28.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 27.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 27.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 27.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.5
FF:10164-103B2 76 years, female 91.5
Globus pallidus
Scaled Tags Per Million: 42.2
FF:10175-103C4 60 years, female 63.1
FF:10161-103A8 76 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 113.4
FF:10037-101F1 23-56 years, mixed 113.4
Putamen
Scaled Tags Per Million: 141.7
FF:10176-103C5 60 years, female 141.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 127.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 83.6
Samples: 4

Max nTPM: 89.4
Min nTPM: 75.9
Sample A Male 85.9
Sample B Male 89.4
Sample C Female 75.9
Sample D Female 83.2
Septum
nTPM: 127.6
Samples: 4

Max nTPM: 134.0
Min nTPM: 117.8
Sample A Male 133.9
Sample B Male 134.0
Sample C Female 124.5
Sample D Female 117.8
Ventral forebrain
nTPM: 100.4
Samples: 4

Max nTPM: 113.8
Min nTPM: 88.1
Sample A Male 88.1
Sample B Male 113.8
Sample C Female 105.3
Sample D Female 94.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.4
69262114 Antisense, RP_050224_01_A11, Mouse strain C57BL/6J (56 days, male) 9.4
Pallidum
Expression energy: 9.7
69262114 Antisense, RP_050224_01_A11, Mouse strain C57BL/6J (56 days, male) 9.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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