MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:103274.0 nTPM
HPA:103274.0 nTPM
GTEx:97268.8 nTPM
Pig:37694.2 nTPM
Mouse:28656.2 nTPM
Allen mouse:23.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 103274.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96856.3
2586 Male, age 75, left hemisphere 111354.1
2666 Male, age 74, left hemisphere 103419.3
2219 Male, age 76, both hemispheres 101930.5
2828 Female, age 72, unknown 100335.4
1870 Female, age 42, unknown 95117.5
1833 Male, age 53, unknown 94456.0
1830 Male, age 51, unknown 92283.8
1827 Male, age 72, unknown 91770.1
2019 Male, age 18, unknown 91362.1
2411 Female, age 72, unknown 86534.4
Dorsal raphe nucleus
nTPM: 90462.7
1828 Male, age 53, unknown 94674.5
2047 Male, age 72, unknown 92507.2
2750 Male, age 76, both hemispheres 91000.6
2016 Female, age 72, unknown 89382.2
2298 Female, age 72, unknown 84748.9
Inferior colliculus
nTPM: 92337.8
2849 Male, age 72, unknown 97588.0
1890 Male, age 53, unknown 93694.0
1848 Female, age 42, unknown 91539.5
2097 Female, age 72, unknown 86529.8
Median raphe nucleus
nTPM: 103274.0
2220 Male, age 76, midline 103274.0
Pedunculopontine tegmental nucleus
nTPM: 95380.2
2334 Male, age 80, both hemispheres 102192.0
2338 Male, age 61, both hemispheres 94384.8
1921 Female, age 85, both hemispheres 89563.7
Periaquaductal grey, anterior
nTPM: 90383.8
2502 Female, age 75, unknown 92630.1
1795 Male, age 51, unknown 90108.6
1947 Male, age 18, unknown 88412.8
Periaquaductal grey, dorsal
nTPM: 92861.7
2850 Male, age 76, both hemispheres 100028.3
1831 Male, age 72, unknown 91613.4
1840 Male, age 53, unknown 90346.1
2464 Female, age 72, unknown 89458.9
Periaquaductal grey, lateral
nTPM: 87780.4
2140 Male, age 76, both hemispheres 89362.3
2053 Male, age 18, unknown 89174.2
2272 Male, age 74, both hemispheres 84804.8
Pretectal area
nTPM: 94765.7
2667 Female, age 75, unknown 103225.2
1816 Male, age 51, unknown 101837.7
1944 Female, age 72, unknown 101554.1
1817 Female, age 42, unknown 101505.1
2007 Male, age 72, unknown 98027.6
1815 Male, age 53, unknown 97623.4
2825 Male, age 18, unknown 92046.7
2407 Male, age 75, both hemispheres 89625.3
2224 Female, age 72, unknown 87292.3
2316 Male, age 76, right hemisphere 85879.3
2273 Male, age 74, both hemispheres 83806.3
Red nucleus
nTPM: 93749.3
2584 Male, age 75, left hemisphere 101294.5
2588 Male, age 74, left hemisphere 97316.1
2503 Female, age 72, unknown 95514.2
2785 Male, age 18, unknown 95172.1
1954 Female, age 42, unknown 94389.6
1865 Male, age 51, unknown 93484.7
2823 Male, age 76, right hemisphere 92347.9
2227 Male, age 72, unknown 91626.1
2769 Male, age 72, unknown 91506.5
1904 Male, age 53, unknown 91487.6
1821 Female, age 72, unknown 91368.1
2725 Female, age 75, unknown 89484.6
Substantia nigra
nTPM: 98132.5
2665 Male, age 74, both hemispheres 116494.1
2699 Male, age 18, unknown 105356.2
1916 Female, age 42, unknown 104345.1
1889 Female, age 72, unknown 96528.5
1941 Male, age 53, unknown 96175.8
2583 Male, age 75, right hemisphere 95483.1
2241 Male, age 72, unknown 95238.3
1851 Male, age 51, unknown 93362.2
2590 Female, age 75, unknown 90844.0
2409 Female, age 72, unknown 87497.6
Superior colliculus
nTPM: 93699.6
2664 Male, age 75, both hemispheres 105966.0
2087 Female, age 72, unknown 97723.2
2587 Male, age 74, left hemisphere 94797.5
2668 Female, age 75, unknown 92788.0
1913 Female, age 42, unknown 92317.0
2261 Male, age 18, unknown 91073.8
1839 Male, age 51, unknown 91015.5
1796 Male, age 53, unknown 90793.4
1895 Male, age 76, right hemisphere 90312.1
1995 Male, age 72, unknown 90209.7
Ventral tegmental area
nTPM: 93964.2
2218 Male, age 76, both hemispheres 101952.5
1942 Male, age 51, unknown 94919.8
2223 Female, age 72, unknown 94387.7
1915 Female, age 42, unknown 94318.2
2021 Male, age 53, unknown 90522.8
2410 Female, age 72, unknown 87684.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97268.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97268.8
Samples: 139

Max nTPM: 357446.4
Min nTPM: 6701.8
Std nTPM: 66324.9
Median nTPM: 74350.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 357446.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 349191.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 307581.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 284710.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 270412.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 250319.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 238891.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 224783.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 219267.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 215771.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 214599.7
Show allShow less

MIDBRAIN - Pig RNA-seqi
Average nTPM 37694.2
Pig sample Sample description nTPM
Midbrain
nTPM: 37694.2
Samples: 4

Max nTPM: 49920.4
Min nTPM: 29570.5
Sample A Female 29792.7
Sample B Female 49920.4
Sample C Male 41493.1
Sample D Male 29570.5
Periaqueductal gray
nTPM: 29590.1
Samples: 3

Max nTPM: 35387.4
Min nTPM: 23655.5
Sample B Female 35387.4
Sample C Male 29727.4
Sample D Male 23655.5
Substantia nigra
nTPM: 31600.9
Samples: 4

Max nTPM: 36488.0
Min nTPM: 22798.7
Sample A Female 36488.0
Sample B Female 30917.1
Sample C Male 36199.7
Sample D Male 22798.7
Superior colliculi
nTPM: 32175.2
Samples: 4

Max nTPM: 42181.1
Min nTPM: 11344.6
Sample A Female 36408.1
Sample B Female 11344.6
Sample C Male 42181.1
Sample D Male 38767.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28656.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28656.2
Samples: 4

Max nTPM: 29161.8
Min nTPM: 28233.4
Sample A Male 29161.8
Sample B Male 28233.4
Sample C Female 28669.3
Sample D Female 28560.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 23.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.9
81600592 Antisense, RP_090205_01_D01, Mouse strain C57BL/6J (56 days, male) 24.3
74357761 Antisense, RP_051219_04_A05, Mouse strain C57BL/6J (56 days, male) 23.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.