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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:29.5 nTPM
GTEx:29.2 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:61.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 29.5
Sample id Sample description nTPM
Putamen
nTPM: 29.5
1829 Male, age 74, unknown 47.0
2489 Female, age 72, unknown 45.3
2466 Female, age 79, unknown 43.7
2647 Male, age 75, left hemisphere 23.9
2482 Female, age 94, left hemisphere 18.2
1838 Male, age 80, right hemisphere 15.9
1937 Female, age 91, right hemisphere 12.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 29.2
Samples: 205

Max nTPM: 75.2
Min nTPM: 8.4
Std nTPM: 12.9
Median nTPM: 27.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 75.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 71.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 63.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 61.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 60.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 58.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 58.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 57.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 56.9
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 55.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 53.7
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 53.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 53.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 52.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 52.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 50.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 50.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 49.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 48.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 48.0
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 47.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 46.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 45.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 45.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 44.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 44.0
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 43.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 42.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 42.6
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 42.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 42.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 42.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 42.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 41.4
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 41.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 40.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 40.5
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 40.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 39.8
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 39.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 39.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 39.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 39.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 38.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 38.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 38.1
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 37.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 37.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 37.5
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 36.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 36.9
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 36.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 36.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 36.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 36.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 36.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 36.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 35.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 35.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 35.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 34.9
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 34.9
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 34.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 34.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 34.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 33.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 33.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 33.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 33.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 32.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 32.6
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 32.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 32.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 32.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 32.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 32.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 32.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 31.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 31.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 31.6
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 31.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 31.1
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 31.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 30.4
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 30.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 29.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 29.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 29.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 29.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 29.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 29.2
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 28.8
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 28.8
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 28.5
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 28.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 28.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 27.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 27.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 27.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 27.3
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 27.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 27.3
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 27.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 27.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 27.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 27.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 26.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 26.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 26.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 26.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 25.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 25.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 25.8
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 25.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 25.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 25.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 25.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 24.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 24.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 24.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 24.1
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 24.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 23.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 23.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 23.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 23.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 23.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 23.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 23.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 22.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 22.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 22.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 22.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 22.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 22.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 22.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 22.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 22.3
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 22.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 21.9
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 21.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 21.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 21.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 21.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 21.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 21.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 20.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 20.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 20.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 20.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 19.9
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 19.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 19.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 19.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 19.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 18.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 18.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 18.4
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 18.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 18.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 17.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 17.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 17.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 17.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 17.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 17.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 17.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 17.0
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 16.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 16.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 16.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 16.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 16.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 15.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 15.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 15.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 15.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 15.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 15.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 15.5
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 15.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 14.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 14.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 14.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 14.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 14.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 13.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 13.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 13.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 13.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 13.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 13.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 12.4
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 12.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 11.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 11.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 11.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 11.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 10.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 10.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 9.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 9.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 9.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 8.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 8.4
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 126.7
FF:10176-103C5 60 years, female 126.7

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.3
Pig sample Sample description nTPM
Putamen
nTPM: 61.3
Samples: 4

Max nTPM: 78.1
Min nTPM: 45.0
Sample A Female 45.0
Sample B Female 51.6
Sample C Male 70.6
Sample D Male 78.1

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