MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA:27.9 nTPM
GTEx:45.0 nTPM
FANTOM5:6.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.2
1830 Male, age 51, unknown 20.4
2019 Male, age 18, unknown 19.8
1833 Male, age 53, unknown 18.0
1870 Female, age 42, unknown 18.0
2666 Male, age 74, left hemisphere 17.7
2411 Female, age 72, unknown 17.2
2828 Female, age 72, unknown 17.0
1827 Male, age 72, unknown 16.1
2586 Male, age 75, left hemisphere 14.2
2219 Male, age 76, both hemispheres 14.0
Dorsal raphe nucleus
nTPM: 19.0
2016 Female, age 72, unknown 21.5
2750 Male, age 76, both hemispheres 19.6
2298 Female, age 72, unknown 19.5
1828 Male, age 53, unknown 18.4
2047 Male, age 72, unknown 16.1
Inferior colliculus
nTPM: 16.8
1890 Male, age 53, unknown 17.6
1848 Female, age 42, unknown 17.3
2097 Female, age 72, unknown 17.3
2849 Male, age 72, unknown 14.8
Median raphe nucleus
nTPM: 19.0
2220 Male, age 76, midline 19.0
Pedunculopontine tegmental nucleus
nTPM: 27.9
2338 Male, age 61, both hemispheres 48.4
2334 Male, age 80, both hemispheres 21.2
1921 Female, age 85, both hemispheres 14.0
Periaquaductal grey, anterior
nTPM: 16.0
1795 Male, age 51, unknown 18.3
1947 Male, age 18, unknown 15.9
2502 Female, age 75, unknown 13.9
Periaquaductal grey, dorsal
nTPM: 18.8
1831 Male, age 72, unknown 21.2
2850 Male, age 76, both hemispheres 19.4
1840 Male, age 53, unknown 17.5
2464 Female, age 72, unknown 16.9
Periaquaductal grey, lateral
nTPM: 20.4
2272 Male, age 74, both hemispheres 23.5
2140 Male, age 76, both hemispheres 19.0
2053 Male, age 18, unknown 18.6
Pretectal area
nTPM: 19.1
2407 Male, age 75, both hemispheres 24.2
2316 Male, age 76, right hemisphere 24.0
2273 Male, age 74, both hemispheres 21.4
1817 Female, age 42, unknown 19.5
1815 Male, age 53, unknown 19.2
2007 Male, age 72, unknown 19.0
2224 Female, age 72, unknown 18.9
1944 Female, age 72, unknown 18.0
2825 Male, age 18, unknown 17.1
2667 Female, age 75, unknown 14.7
1816 Male, age 51, unknown 14.3
Red nucleus
nTPM: 20.0
2725 Female, age 75, unknown 25.2
1865 Male, age 51, unknown 24.4
2503 Female, age 72, unknown 23.8
2227 Male, age 72, unknown 20.8
2769 Male, age 72, unknown 20.8
2785 Male, age 18, unknown 19.5
1904 Male, age 53, unknown 19.4
1954 Female, age 42, unknown 19.1
1821 Female, age 72, unknown 18.0
2584 Male, age 75, left hemisphere 17.6
2823 Male, age 76, right hemisphere 17.3
2588 Male, age 74, left hemisphere 14.5
Substantia nigra
nTPM: 25.0
2590 Female, age 75, unknown 37.2
2409 Female, age 72, unknown 29.3
2699 Male, age 18, unknown 27.2
2665 Male, age 74, both hemispheres 26.4
2241 Male, age 72, unknown 25.0
1916 Female, age 42, unknown 23.9
1851 Male, age 51, unknown 22.4
2583 Male, age 75, right hemisphere 21.9
1941 Male, age 53, unknown 20.3
1889 Female, age 72, unknown 16.4
Superior colliculus
nTPM: 18.5
1913 Female, age 42, unknown 25.3
2587 Male, age 74, left hemisphere 21.6
1995 Male, age 72, unknown 20.1
2087 Female, age 72, unknown 17.9
2664 Male, age 75, both hemispheres 17.1
1796 Male, age 53, unknown 16.9
2261 Male, age 18, unknown 16.8
1839 Male, age 51, unknown 16.7
2668 Female, age 75, unknown 16.4
1895 Male, age 76, right hemisphere 16.2
Ventral tegmental area
nTPM: 21.5
2021 Male, age 53, unknown 26.1
1915 Female, age 42, unknown 21.7
2218 Male, age 76, both hemispheres 21.2
2410 Female, age 72, unknown 20.6
1942 Male, age 51, unknown 19.7
2223 Female, age 72, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.0
Samples: 139

Max nTPM: 297.5
Min nTPM: 2.3
Std nTPM: 51.3
Median nTPM: 24.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 297.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 242.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 238.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 227.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 155.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 154.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 152.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 148.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 134.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 125.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 116.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.8
FF:10158-103A5 76 years, female 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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