BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:7.0 nTPM
HPA:7.0 nTPM
GTEx:9.1 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:17.1 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037525Antibody HPA037526
Glial cells Not detectedLow
Neuronal cells LowMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.0
1854 Male, age 80, left hemisphere 10.0
1857 Female, age 85, left hemisphere 9.2
2290 Female, age 72, unknown 7.6
2289 Male, age 61, right hemisphere 6.5
1781 Male, age 74, unknown 6.4
2846 Female, age 79, unknown 5.8
2481 Female, age 94, left hemisphere 5.3
2288 Male, age 75, left hemisphere 4.8
Claustrum
nTPM: 3.7
2292 Female, age 85, both hemispheres 4.0
2196 Female, age 79, unknown 3.9
2392 Female, age 94, both hemispheres 3.9
1956 Male, age 74, unknown 3.7
2491 Male, age 75, both hemispheres 3.7
2568 Male, age 61, both hemispheres 3.7
2198 Male, age 80, both hemispheres 3.5
2645 Female, age 72, unknown 3.5
2284 Female, age 91, both hemispheres 3.4
Globus pallidus, externus
nTPM: 5.4
1996 Male, age 80, right hemisphere 5.9
2646 Male, age 61, right hemisphere 5.5
2567 Female, age 72, unknown 5.3
2772 Female, age 79, unknown 5.2
2395 Male, age 75, both hemispheres 5.0
Globus pallidus, internus
nTPM: 5.3
2778 Female, age 91, both hemispheres 5.7
2111 Female, age 85, right hemisphere 5.6
2483 Female, age 94, right hemisphere 5.6
2037 Male, age 80, right hemisphere 5.3
2566 Female, age 72, unknown 5.3
2287 Male, age 75, right hemisphere 5.2
1818 Male, age 74, unknown 4.7
Nucleus accumbens
nTPM: 7.0
2824 Male, age 61, right hemisphere 10.5
1783 Male, age 74, unknown 9.5
1806 Female, age 85, left hemisphere 8.3
1856 Female, age 91, right hemisphere 7.0
2286 Male, age 75, left hemisphere 5.9
2698 Female, age 72, unknown 5.7
2732 Male, age 80, right hemisphere 4.9
2391 Female, age 94, left hemisphere 4.3
Nucleus basalis of Meynert
nTPM: 5.6
2393 Male, age 80, right hemisphere 7.6
2569 Male, age 61, both hemispheres 5.8
2484 Female, age 94, left hemisphere 4.7
2821 Male, age 75, both hemispheres 4.1
Nucleus of the diagonal band
nTPM: 3.5
1979 Male, age 74, unknown 3.7
2029 Male, age 61, right hemisphere 3.6
1812 Female, age 91, both hemispheres 3.5
2775 Male, age 80, right hemisphere 3.4
2195 Female, age 85, both hemispheres 3.1
Olfactory tubercle
nTPM: 3.5
1846 Male, age 80, right hemisphere 3.7
2487 Female, age 94, left hemisphere 3.5
2856 Male, age 75, right hemisphere 3.4
1998 Female, age 91, both hemispheres 3.2
Putamen
nTPM: 6.2
1838 Male, age 80, right hemisphere 10.3
1937 Female, age 91, right hemisphere 7.5
1829 Male, age 74, unknown 6.4
2466 Female, age 79, unknown 5.3
2482 Female, age 94, left hemisphere 5.0
2489 Female, age 72, unknown 4.6
2647 Male, age 75, left hemisphere 4.4
Septal nuclei
nTPM: 3.7
2394 Male, age 61, left hemisphere 4.6
2199 Male, age 80, right hemisphere 4.1
2059 Female, age 85, both hemispheres 3.9
2009 Female, age 91, both hemispheres 3.5
2629 Female, age 94, right hemisphere 3.5
2031 Female, age 72, unknown 3.3
1960 Male, age 74, unknown 3.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.1
Samples: 246

Max nTPM: 24.5
Min nTPM: 1.2
Std nTPM: 3.4
Median nTPM: 8.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 24.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 24.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 21.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 18.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 18.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 17.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 17.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 17.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 17.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 16.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 16.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 24.4
Min nTPM: 1.5
Std nTPM: 4.0
Median nTPM: 7.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 24.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 21.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 20.0
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 19.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 18.2
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 18.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 17.8
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 17.4
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 17.2
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 17.1
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 16.9
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Brain - Putamen (basal ganglia)
Average nTPM: 8.7
Samples: 205

Max nTPM: 24.6
Min nTPM: 3.1
Std nTPM: 3.6
Median nTPM: 7.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 24.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 19.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 19.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 19.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 19.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 18.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 18.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 18.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 17.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 17.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 17.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.9
FF:10164-103B2 76 years, female 5.9
Globus pallidus
Scaled Tags Per Million: 9.8
FF:10175-103C4 60 years, female 11.8
FF:10161-103A8 76 years, female 7.9
Nucleus accumbens
Scaled Tags Per Million: 6.2
FF:10037-101F1 23-56 years, mixed 6.2
Putamen
Scaled Tags Per Million: 6.9
FF:10176-103C5 60 years, female 6.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 5.0
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 5.0
Sample C Male 6.3
Sample D Male 4.3
Putamen
nTPM: 4.9
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 4.4
Sample C Male 6.2
Sample D Male 5.2
Septum
nTPM: 4.6
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.2
Sample C Male 4.0
Sample D Male 6.2
Ventral pallidum
nTPM: 4.2
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.6
Sample A Female 3.7
Sample B Female 5.1
Sample C Male 3.6
Sample D Male 4.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.7
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.7
Sample A Male 6.0
Sample B Male 4.7
Sample C Female 6.6
Sample D Female 5.4
Septum
nTPM: 17.1
Samples: 4

Max nTPM: 20.1
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 20.1
Sample C Female 17.7
Sample D Female 18.8
Ventral forebrain
nTPM: 5.7
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.9
Sample A Male 6.0
Sample B Male 4.9
Sample C Female 5.2
Sample D Female 6.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68203462 Antisense, RP_041208_01_A09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
68203462 Antisense, RP_041208_01_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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