BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.5 nTPM
HPA:3.5 nTPM
GTEx:1.8 nTPM
FANTOM5:45.5 Scaled Tags Per Million
Pig:7.9 nTPM
Mouse:12.4 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045188
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.5
2481 Female, age 94, left hemisphere 1.8
1854 Male, age 80, left hemisphere 1.7
2288 Male, age 75, left hemisphere 1.6
2289 Male, age 61, right hemisphere 1.6
2290 Female, age 72, unknown 1.5
2846 Female, age 79, unknown 1.3
1781 Male, age 74, unknown 1.2
1857 Female, age 85, left hemisphere 1.1
Claustrum
nTPM: 1.7
2392 Female, age 94, both hemispheres 2.7
2645 Female, age 72, unknown 2.0
2284 Female, age 91, both hemispheres 1.7
2491 Male, age 75, both hemispheres 1.7
2198 Male, age 80, both hemispheres 1.5
2292 Female, age 85, both hemispheres 1.4
2568 Male, age 61, both hemispheres 1.4
1956 Male, age 74, unknown 1.3
2196 Female, age 79, unknown 1.3
Globus pallidus, externus
nTPM: 3.5
1996 Male, age 80, right hemisphere 4.7
2646 Male, age 61, right hemisphere 4.0
2772 Female, age 79, unknown 3.1
2567 Female, age 72, unknown 3.0
2395 Male, age 75, both hemispheres 2.6
Globus pallidus, internus
nTPM: 3.4
2566 Female, age 72, unknown 4.6
2037 Male, age 80, right hemisphere 4.4
2778 Female, age 91, both hemispheres 4.0
2111 Female, age 85, right hemisphere 3.3
2287 Male, age 75, right hemisphere 2.8
2483 Female, age 94, right hemisphere 2.7
1818 Male, age 74, unknown 2.0
Nucleus accumbens
nTPM: 1.8
2391 Female, age 94, left hemisphere 3.9
2732 Male, age 80, right hemisphere 2.5
2698 Female, age 72, unknown 2.4
2286 Male, age 75, left hemisphere 1.3
1806 Female, age 85, left hemisphere 1.2
2824 Male, age 61, right hemisphere 1.2
1783 Male, age 74, unknown 0.9
1856 Female, age 91, right hemisphere 0.9
Nucleus basalis of Meynert
nTPM: 2.5
2569 Male, age 61, both hemispheres 3.7
2393 Male, age 80, right hemisphere 2.7
2484 Female, age 94, left hemisphere 2.2
2821 Male, age 75, both hemispheres 1.3
Nucleus of the diagonal band
nTPM: 1.4
1812 Female, age 91, both hemispheres 1.8
2029 Male, age 61, right hemisphere 1.4
1979 Male, age 74, unknown 1.3
2195 Female, age 85, both hemispheres 1.3
2775 Male, age 80, right hemisphere 1.1
Olfactory tubercle
nTPM: 1.6
2856 Male, age 75, right hemisphere 1.7
1846 Male, age 80, right hemisphere 1.6
1998 Female, age 91, both hemispheres 1.5
2487 Female, age 94, left hemisphere 1.5
Putamen
nTPM: 1.7
2489 Female, age 72, unknown 2.7
2482 Female, age 94, left hemisphere 2.5
2647 Male, age 75, left hemisphere 1.8
2466 Female, age 79, unknown 1.6
1829 Male, age 74, unknown 1.3
1937 Female, age 91, right hemisphere 1.2
1838 Male, age 80, right hemisphere 0.8
Septal nuclei
nTPM: 2.4
2394 Male, age 61, left hemisphere 4.5
2199 Male, age 80, right hemisphere 3.2
2009 Female, age 91, both hemispheres 2.4
2031 Female, age 72, unknown 2.2
2059 Female, age 85, both hemispheres 2.0
2629 Female, age 94, right hemisphere 1.4
1960 Male, age 74, unknown 1.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.5
Samples: 246

Max nTPM: 8.5
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 1.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 8.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 7.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 5.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 5.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 4.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 4.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 4.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 4.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 3.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.2
Samples: 246

Max nTPM: 5.5
Min nTPM: 0.0
Std nTPM: 1.0
Median nTPM: 1.0
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 5.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 4.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 4.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 4.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 4.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 4.0
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 3.9
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 3.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 3.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 3.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 3.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 1.8
Samples: 205

Max nTPM: 6.4
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 1.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 6.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 6.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 5.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 5.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 4.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 4.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 4.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 4.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 4.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 4.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.8
FF:10164-103B2 76 years, female 20.8
Globus pallidus
Scaled Tags Per Million: 45.5
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 35.0
Nucleus accumbens
Scaled Tags Per Million: 13.2
FF:10037-101F1 23-56 years, mixed 13.2
Putamen
Scaled Tags Per Million: 15.1
FF:10176-103C5 60 years, female 15.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.9
Pig sample Sample description nTPM
Caudate
nTPM: 4.9
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.7
Sample A Female 5.1
Sample B Female 6.3
Sample C Male 3.7
Sample D Male 4.3
Putamen
nTPM: 5.4
Samples: 4

Max nTPM: 7.1
Min nTPM: 3.9
Sample A Female 7.1
Sample B Female 3.9
Sample C Male 5.7
Sample D Male 4.8
Septum
nTPM: 7.9
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.7
Sample A Female 7.1
Sample B Female 8.1
Sample C Male 10.7
Sample D Male 5.7
Ventral pallidum
nTPM: 7.4
Samples: 4

Max nTPM: 10.7
Min nTPM: 4.6
Sample A Female 5.5
Sample B Female 10.7
Sample C Male 8.7
Sample D Male 4.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.8
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.9
Sample A Male 5.1
Sample B Male 4.9
Sample C Female 6.5
Sample D Female 6.6
Septum
nTPM: 12.5
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.5
Sample A Male 9.5
Sample B Male 13.9
Sample C Female 13.4
Sample D Female 13.0
Ventral forebrain
nTPM: 9.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 5.6
Sample A Male 5.6
Sample B Male 10.5
Sample C Female 10.6
Sample D Female 9.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
74881927 Antisense, RP_060315_04_D11, Mouse strain C57BL/6J (56 days, male) 0.1
69530768 Antisense, RP_050421_04_E06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
74881927 Antisense, RP_060315_04_D11, Mouse strain C57BL/6J (56 days, male) 0.1
69530768 Antisense, RP_050421_04_E06, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.