BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.6 nTPM
HPA:5.6 nTPM
GTEx:26.0 nTPM
FANTOM5:3.1 Scaled Tags Per Million
Mouse:2.5 nTPM
Allen mouse:5.0 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB015363
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.6
2846 Female, age 79, unknown 6.5
1857 Female, age 85, left hemisphere 5.4
2288 Male, age 75, left hemisphere 5.1
2289 Male, age 61, right hemisphere 5.1
2290 Female, age 72, unknown 4.7
2481 Female, age 94, left hemisphere 4.4
1781 Male, age 74, unknown 3.2
1854 Male, age 80, left hemisphere 2.1
Claustrum
nTPM: 2.3
2284 Female, age 91, both hemispheres 3.3
2292 Female, age 85, both hemispheres 2.6
1956 Male, age 74, unknown 2.5
2568 Male, age 61, both hemispheres 2.4
2392 Female, age 94, both hemispheres 2.3
2491 Male, age 75, both hemispheres 2.3
2198 Male, age 80, both hemispheres 2.1
2196 Female, age 79, unknown 1.8
2645 Female, age 72, unknown 1.3
Globus pallidus, externus
nTPM: 2.3
2567 Female, age 72, unknown 4.5
2646 Male, age 61, right hemisphere 4.0
2395 Male, age 75, both hemispheres 1.8
2772 Female, age 79, unknown 0.8
1996 Male, age 80, right hemisphere 0.4
Globus pallidus, internus
nTPM: 2.1
2566 Female, age 72, unknown 3.6
2111 Female, age 85, right hemisphere 3.4
2483 Female, age 94, right hemisphere 1.9
2778 Female, age 91, both hemispheres 1.9
1818 Male, age 74, unknown 1.5
2037 Male, age 80, right hemisphere 1.5
2287 Male, age 75, right hemisphere 0.9
Nucleus accumbens
nTPM: 2.9
1806 Female, age 85, left hemisphere 6.1
1783 Male, age 74, unknown 3.5
2286 Male, age 75, left hemisphere 3.1
2391 Female, age 94, left hemisphere 2.8
2732 Male, age 80, right hemisphere 2.8
2824 Male, age 61, right hemisphere 2.8
2698 Female, age 72, unknown 1.9
1856 Female, age 91, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 4.3
2484 Female, age 94, left hemisphere 7.0
2393 Male, age 80, right hemisphere 4.4
2569 Male, age 61, both hemispheres 2.9
2821 Male, age 75, both hemispheres 2.9
Nucleus of the diagonal band
nTPM: 1.0
1979 Male, age 74, unknown 1.9
2029 Male, age 61, right hemisphere 1.5
2195 Female, age 85, both hemispheres 0.8
2775 Male, age 80, right hemisphere 0.7
1812 Female, age 91, both hemispheres 0.0
Olfactory tubercle
nTPM: 1.2
2487 Female, age 94, left hemisphere 2.3
1998 Female, age 91, both hemispheres 1.2
2856 Male, age 75, right hemisphere 1.2
1846 Male, age 80, right hemisphere 0.1
Putamen
nTPM: 5.6
2466 Female, age 79, unknown 8.5
2647 Male, age 75, left hemisphere 7.1
2489 Female, age 72, unknown 6.8
1829 Male, age 74, unknown 6.2
2482 Female, age 94, left hemisphere 5.0
1838 Male, age 80, right hemisphere 3.7
1937 Female, age 91, right hemisphere 1.6
Septal nuclei
nTPM: 1.2
2394 Male, age 61, left hemisphere 2.2
2059 Female, age 85, both hemispheres 2.0
1960 Male, age 74, unknown 1.3
2199 Male, age 80, right hemisphere 1.2
2031 Female, age 72, unknown 0.9
2009 Female, age 91, both hemispheres 0.5
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.9
Samples: 246

Max nTPM: 53.3
Min nTPM: 0.9
Std nTPM: 8.9
Median nTPM: 18.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 53.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 46.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 45.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 44.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 43.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 43.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 43.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 43.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 42.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 41.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 40.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.4
Samples: 246

Max nTPM: 56.9
Min nTPM: 3.3
Std nTPM: 9.6
Median nTPM: 15.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 56.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 55.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 53.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 50.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 47.1
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 44.0
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 43.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 42.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 41.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 40.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 38.7
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Brain - Putamen (basal ganglia)
Average nTPM: 26.0
Samples: 205

Max nTPM: 60.7
Min nTPM: 6.2
Std nTPM: 11.0
Median nTPM: 24.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 60.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 58.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 56.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 56.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 52.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 50.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 50.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 49.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 49.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 46.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 46.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.0
FF:10164-103B2 76 years, female 2.0
Globus pallidus
Scaled Tags Per Million: 0.6
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.5
Nucleus accumbens
Scaled Tags Per Million: 3.1
FF:10037-101F1 23-56 years, mixed 3.1
Putamen
Scaled Tags Per Million: 1.8
FF:10176-103C5 60 years, female 1.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.5
Samples: 4

Max nTPM: 4.0
Min nTPM: 1.5
Sample A Male 2.6
Sample B Male 2.0
Sample C Female 4.0
Sample D Female 1.5
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.2
Sample A Male 1.2
Sample B Male 0.7
Sample C Female 0.3
Sample D Female 0.2
Ventral forebrain
nTPM: 2.4
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.5
Sample A Male 3.6
Sample B Male 1.5
Sample C Female 1.7
Sample D Female 2.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.0
68148758 Antisense, RP_041116_02_C02, Mouse strain C57BL/6J (56 days, male) 5.0
Pallidum
Expression energy: 3.9
68148758 Antisense, RP_041116_02_C02, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

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