MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA:32.9 nTPM
GTEx:52.3 nTPM
FANTOM5:3.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2219 Male, age 76, both hemispheres 23.3
1827 Male, age 72, unknown 19.1
1870 Female, age 42, unknown 16.8
2666 Male, age 74, left hemisphere 16.8
2586 Male, age 75, left hemisphere 16.1
1830 Male, age 51, unknown 16.0
1833 Male, age 53, unknown 15.8
2411 Female, age 72, unknown 15.0
2828 Female, age 72, unknown 14.1
2019 Male, age 18, unknown 12.1
Dorsal raphe nucleus
nTPM: 16.5
1828 Male, age 53, unknown 17.7
2047 Male, age 72, unknown 17.3
2750 Male, age 76, both hemispheres 17.1
2298 Female, age 72, unknown 17.0
2016 Female, age 72, unknown 13.5
Inferior colliculus
nTPM: 19.8
2849 Male, age 72, unknown 26.1
2097 Female, age 72, unknown 18.8
1848 Female, age 42, unknown 18.0
1890 Male, age 53, unknown 16.1
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Pedunculopontine tegmental nucleus
nTPM: 21.7
2334 Male, age 80, both hemispheres 26.8
1921 Female, age 85, both hemispheres 20.2
2338 Male, age 61, both hemispheres 18.2
Periaquaductal grey, anterior
nTPM: 20.7
2502 Female, age 75, unknown 26.1
1947 Male, age 18, unknown 18.9
1795 Male, age 51, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 20.4
2850 Male, age 76, both hemispheres 27.0
1840 Male, age 53, unknown 20.5
2464 Female, age 72, unknown 18.1
1831 Male, age 72, unknown 16.0
Periaquaductal grey, lateral
nTPM: 17.4
2140 Male, age 76, both hemispheres 21.4
2053 Male, age 18, unknown 15.9
2272 Male, age 74, both hemispheres 14.8
Pretectal area
nTPM: 18.0
2407 Male, age 75, both hemispheres 22.5
2224 Female, age 72, unknown 21.9
2825 Male, age 18, unknown 21.1
1816 Male, age 51, unknown 19.1
1817 Female, age 42, unknown 18.4
1944 Female, age 72, unknown 17.8
2007 Male, age 72, unknown 17.3
1815 Male, age 53, unknown 16.4
2273 Male, age 74, both hemispheres 15.7
2667 Female, age 75, unknown 14.2
2316 Male, age 76, right hemisphere 13.6
Red nucleus
nTPM: 13.4
2769 Male, age 72, unknown 15.3
2227 Male, age 72, unknown 15.1
1954 Female, age 42, unknown 15.0
1821 Female, age 72, unknown 14.7
2503 Female, age 72, unknown 14.4
2785 Male, age 18, unknown 14.4
2584 Male, age 75, left hemisphere 14.0
1865 Male, age 51, unknown 12.8
2725 Female, age 75, unknown 12.7
1904 Male, age 53, unknown 12.1
2823 Male, age 76, right hemisphere 11.1
2588 Male, age 74, left hemisphere 9.7
Substantia nigra
nTPM: 17.8
1941 Male, age 53, unknown 21.4
1916 Female, age 42, unknown 20.6
2699 Male, age 18, unknown 19.4
2590 Female, age 75, unknown 19.1
1889 Female, age 72, unknown 18.1
2665 Male, age 74, both hemispheres 17.6
1851 Male, age 51, unknown 16.9
2241 Male, age 72, unknown 16.0
2409 Female, age 72, unknown 15.4
2583 Male, age 75, right hemisphere 13.2
Superior colliculus
nTPM: 15.3
1796 Male, age 53, unknown 18.3
1839 Male, age 51, unknown 18.0
1895 Male, age 76, right hemisphere 17.5
2664 Male, age 75, both hemispheres 17.5
2261 Male, age 18, unknown 16.7
2087 Female, age 72, unknown 15.1
2587 Male, age 74, left hemisphere 14.7
2668 Female, age 75, unknown 14.2
1913 Female, age 42, unknown 11.5
1995 Male, age 72, unknown 9.9
Ventral tegmental area
nTPM: 18.3
2218 Male, age 76, both hemispheres 22.6
1915 Female, age 42, unknown 19.8
1942 Male, age 51, unknown 18.5
2223 Female, age 72, unknown 17.8
2021 Male, age 53, unknown 16.6
2410 Female, age 72, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.3
Samples: 139

Max nTPM: 129.2
Min nTPM: 7.2
Std nTPM: 22.2
Median nTPM: 49.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 129.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 118.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 113.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 110.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 107.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 97.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 96.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 95.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 91.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 89.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 89.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.3
FF:10158-103A5 76 years, female 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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