BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:24.3 nTPM
HPA:24.3 nTPM
GTEx:51.7 nTPM
FANTOM5:26.8 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA045564Antibody HPA058982
Glial cells Not detectedNot detected
Neuronal cells LowNot detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.5
2481 Female, age 94, left hemisphere 18.1
2288 Male, age 75, left hemisphere 16.3
1781 Male, age 74, unknown 15.2
2290 Female, age 72, unknown 12.8
1857 Female, age 85, left hemisphere 11.9
2846 Female, age 79, unknown 11.8
2289 Male, age 61, right hemisphere 10.9
1854 Male, age 80, left hemisphere 10.5
Claustrum
nTPM: 21.0
2284 Female, age 91, both hemispheres 25.9
2198 Male, age 80, both hemispheres 23.8
2491 Male, age 75, both hemispheres 22.8
2568 Male, age 61, both hemispheres 21.4
2645 Female, age 72, unknown 21.1
1956 Male, age 74, unknown 19.5
2196 Female, age 79, unknown 19.3
2392 Female, age 94, both hemispheres 18.3
2292 Female, age 85, both hemispheres 16.6
Globus pallidus, externus
nTPM: 10.8
2772 Female, age 79, unknown 13.0
2395 Male, age 75, both hemispheres 11.7
2646 Male, age 61, right hemisphere 10.3
2567 Female, age 72, unknown 9.6
1996 Male, age 80, right hemisphere 9.2
Globus pallidus, internus
nTPM: 11.0
2483 Female, age 94, right hemisphere 15.0
1818 Male, age 74, unknown 14.4
2287 Male, age 75, right hemisphere 12.6
2566 Female, age 72, unknown 11.1
2037 Male, age 80, right hemisphere 8.6
2111 Female, age 85, right hemisphere 7.7
2778 Female, age 91, both hemispheres 7.7
Nucleus accumbens
nTPM: 13.2
2286 Male, age 75, left hemisphere 17.6
1856 Female, age 91, right hemisphere 15.3
2698 Female, age 72, unknown 13.7
1783 Male, age 74, unknown 12.3
2391 Female, age 94, left hemisphere 12.1
1806 Female, age 85, left hemisphere 11.7
2824 Male, age 61, right hemisphere 11.7
2732 Male, age 80, right hemisphere 11.0
Nucleus basalis of Meynert
nTPM: 11.0
2821 Male, age 75, both hemispheres 13.5
2484 Female, age 94, left hemisphere 11.3
2393 Male, age 80, right hemisphere 9.6
2569 Male, age 61, both hemispheres 9.5
Nucleus of the diagonal band
nTPM: 23.0
2195 Female, age 85, both hemispheres 26.9
1812 Female, age 91, both hemispheres 23.5
2775 Male, age 80, right hemisphere 23.3
1979 Male, age 74, unknown 22.0
2029 Male, age 61, right hemisphere 19.3
Olfactory tubercle
nTPM: 24.3
2487 Female, age 94, left hemisphere 29.0
2856 Male, age 75, right hemisphere 23.8
1998 Female, age 91, both hemispheres 22.9
1846 Male, age 80, right hemisphere 21.5
Putamen
nTPM: 11.8
2482 Female, age 94, left hemisphere 15.9
2647 Male, age 75, left hemisphere 13.6
1937 Female, age 91, right hemisphere 12.2
1838 Male, age 80, right hemisphere 11.8
1829 Male, age 74, unknown 10.8
2466 Female, age 79, unknown 9.2
2489 Female, age 72, unknown 9.1
Septal nuclei
nTPM: 19.5
2629 Female, age 94, right hemisphere 30.4
1960 Male, age 74, unknown 21.2
2009 Female, age 91, both hemispheres 20.6
2031 Female, age 72, unknown 18.7
2199 Male, age 80, right hemisphere 18.0
2059 Female, age 85, both hemispheres 16.7
2394 Male, age 61, left hemisphere 10.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 51.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.4
Samples: 246

Max nTPM: 97.3
Min nTPM: 16.9
Std nTPM: 11.5
Median nTPM: 38.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 97.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 89.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 78.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 77.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 76.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 70.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 62.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 62.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 61.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 60.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 58.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.7
Samples: 246

Max nTPM: 124.3
Min nTPM: 16.3
Std nTPM: 14.7
Median nTPM: 51.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 124.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 107.8
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 84.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 84.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 82.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 81.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 81.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 79.7
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 79.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 79.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 78.7
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Brain - Putamen (basal ganglia)
Average nTPM: 34.7
Samples: 205

Max nTPM: 63.4
Min nTPM: 10.7
Std nTPM: 9.2
Median nTPM: 34.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 63.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 62.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 60.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 60.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 59.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 57.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 55.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 55.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 53.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 52.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 51.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.5
FF:10164-103B2 76 years, female 15.5
Globus pallidus
Scaled Tags Per Million: 5.3
FF:10161-103A8 76 years, female 5.9
FF:10175-103C4 60 years, female 4.7
Nucleus accumbens
Scaled Tags Per Million: 26.8
FF:10037-101F1 23-56 years, mixed 26.8
Putamen
Scaled Tags Per Million: 19.1
FF:10176-103C5 60 years, female 19.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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