BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.3 nTPM
HPA:4.3 nTPM
GTEx:7.2 nTPM
FANTOM5:6.1 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:1.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044960
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.5
1854 Male, age 80, left hemisphere 3.8
1857 Female, age 85, left hemisphere 3.8
2481 Female, age 94, left hemisphere 3.8
2289 Male, age 61, right hemisphere 3.7
1781 Male, age 74, unknown 3.5
2290 Female, age 72, unknown 3.5
2846 Female, age 79, unknown 3.2
2288 Male, age 75, left hemisphere 3.0
Claustrum
nTPM: 3.9
2645 Female, age 72, unknown 4.4
2284 Female, age 91, both hemispheres 3.9
2292 Female, age 85, both hemispheres 3.9
2568 Male, age 61, both hemispheres 3.9
2196 Female, age 79, unknown 3.8
2198 Male, age 80, both hemispheres 3.8
2491 Male, age 75, both hemispheres 3.8
1956 Male, age 74, unknown 3.7
2392 Female, age 94, both hemispheres 3.7
Globus pallidus, externus
nTPM: 4.3
2567 Female, age 72, unknown 4.6
1996 Male, age 80, right hemisphere 4.3
2646 Male, age 61, right hemisphere 4.3
2772 Female, age 79, unknown 4.3
2395 Male, age 75, both hemispheres 3.9
Globus pallidus, internus
nTPM: 4.0
2037 Male, age 80, right hemisphere 4.4
2483 Female, age 94, right hemisphere 4.1
2566 Female, age 72, unknown 4.1
1818 Male, age 74, unknown 4.0
2287 Male, age 75, right hemisphere 3.9
2111 Female, age 85, right hemisphere 3.8
2778 Female, age 91, both hemispheres 3.4
Nucleus accumbens
nTPM: 3.5
2732 Male, age 80, right hemisphere 4.4
1806 Female, age 85, left hemisphere 3.6
2698 Female, age 72, unknown 3.6
1783 Male, age 74, unknown 3.5
2391 Female, age 94, left hemisphere 3.4
1856 Female, age 91, right hemisphere 3.3
2824 Male, age 61, right hemisphere 3.3
2286 Male, age 75, left hemisphere 3.1
Nucleus basalis of Meynert
nTPM: 4.0
2569 Male, age 61, both hemispheres 4.8
2821 Male, age 75, both hemispheres 4.0
2393 Male, age 80, right hemisphere 3.8
2484 Female, age 94, left hemisphere 3.3
Nucleus of the diagonal band
nTPM: 4.0
2195 Female, age 85, both hemispheres 4.4
2775 Male, age 80, right hemisphere 4.4
2029 Male, age 61, right hemisphere 3.9
1979 Male, age 74, unknown 3.8
1812 Female, age 91, both hemispheres 3.7
Olfactory tubercle
nTPM: 4.1
1846 Male, age 80, right hemisphere 4.6
2856 Male, age 75, right hemisphere 4.3
1998 Female, age 91, both hemispheres 3.7
2487 Female, age 94, left hemisphere 3.7
Putamen
nTPM: 3.5
2647 Male, age 75, left hemisphere 3.9
1838 Male, age 80, right hemisphere 3.6
1829 Male, age 74, unknown 3.5
2482 Female, age 94, left hemisphere 3.5
2489 Female, age 72, unknown 3.4
1937 Female, age 91, right hemisphere 3.3
2466 Female, age 79, unknown 3.0
Septal nuclei
nTPM: 4.3
2059 Female, age 85, both hemispheres 5.0
2199 Male, age 80, right hemisphere 4.6
1960 Male, age 74, unknown 4.2
2009 Female, age 91, both hemispheres 4.2
2629 Female, age 94, right hemisphere 4.2
2394 Male, age 61, left hemisphere 3.9
2031 Female, age 72, unknown 3.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.7
Samples: 246

Max nTPM: 15.6
Min nTPM: 1.4
Std nTPM: 2.2
Median nTPM: 5.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 12.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 12.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 12.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 11.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 11.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 11.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 10.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 10.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 10.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 10.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.2
Samples: 246

Max nTPM: 24.1
Min nTPM: 2.1
Std nTPM: 3.6
Median nTPM: 6.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 24.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 22.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 21.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 20.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 19.1
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 18.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 17.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 17.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 16.3
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 14.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 14.6
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Brain - Putamen (basal ganglia)
Average nTPM: 5.9
Samples: 205

Max nTPM: 21.6
Min nTPM: 1.5
Std nTPM: 2.7
Median nTPM: 5.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 21.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 15.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 14.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 14.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 14.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 13.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 12.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 12.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 12.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 11.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 10.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.3
FF:10164-103B2 76 years, female 4.3
Globus pallidus
Scaled Tags Per Million: 3.6
FF:10161-103A8 76 years, female 4.8
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 6.1
FF:10037-101F1 23-56 years, mixed 6.1
Putamen
Scaled Tags Per Million: 2.9
FF:10176-103C5 60 years, female 2.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.9
Pig sample Sample description nTPM
Caudate
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.9
Sample C Male 0.9
Sample D Male 0.7
Putamen
nTPM: 0.7
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.6
Sample A Female 0.7
Sample B Female 0.7
Sample C Male 0.6
Sample D Male 0.6
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 0.8
Sample C Male 0.8
Sample D Male 0.7
Ventral pallidum
nTPM: 0.9
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.1
Sample C Male 1.1
Sample D Male 0.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.0
Septum
nTPM: 1.3
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.9
Sample A Male 1.0
Sample B Male 1.1
Sample C Female 2.0
Sample D Female 0.9
Ventral forebrain
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Male 0.5
Sample B Male 0.9
Sample C Female 0.9
Sample D Female 0.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1871 Antisense, RP_040526_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
1870 Antisense, RP_040526_01_B05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
1871 Antisense, RP_040526_01_B05, Mouse strain C57BL/6J (56 days, male) 0.1
1870 Antisense, RP_040526_01_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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