MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA:7.5 nTPM
GTEx:174.0 nTPM
FANTOM5:585.8 Scaled Tags Per Million
Pig:55.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.4
2219 Male, age 76, both hemispheres 4.0
1830 Male, age 51, unknown 3.8
2666 Male, age 74, left hemisphere 3.8
1870 Female, age 42, unknown 3.5
2828 Female, age 72, unknown 3.5
2019 Male, age 18, unknown 3.4
2411 Female, age 72, unknown 3.4
2586 Male, age 75, left hemisphere 3.1
1833 Male, age 53, unknown 3.0
1827 Male, age 72, unknown 2.6
Dorsal raphe nucleus
nTPM: 3.3
2016 Female, age 72, unknown 3.7
2298 Female, age 72, unknown 3.5
2750 Male, age 76, both hemispheres 3.5
1828 Male, age 53, unknown 3.0
2047 Male, age 72, unknown 2.9
Inferior colliculus
nTPM: 3.2
1848 Female, age 42, unknown 3.5
2097 Female, age 72, unknown 3.4
1890 Male, age 53, unknown 3.0
2849 Male, age 72, unknown 2.9
Median raphe nucleus
nTPM: 3.6
2220 Male, age 76, midline 3.6
Pedunculopontine tegmental nucleus
nTPM: 3.4
2334 Male, age 80, both hemispheres 3.7
2338 Male, age 61, both hemispheres 3.6
1921 Female, age 85, both hemispheres 3.0
Periaquaductal grey, anterior
nTPM: 3.5
1795 Male, age 51, unknown 3.9
2502 Female, age 75, unknown 3.5
1947 Male, age 18, unknown 3.1
Periaquaductal grey, dorsal
nTPM: 4.1
1831 Male, age 72, unknown 5.8
2850 Male, age 76, both hemispheres 4.3
2464 Female, age 72, unknown 3.4
1840 Male, age 53, unknown 2.9
Periaquaductal grey, lateral
nTPM: 4.8
2272 Male, age 74, both hemispheres 5.7
2053 Male, age 18, unknown 4.7
2140 Male, age 76, both hemispheres 4.0
Pretectal area
nTPM: 3.6
2273 Male, age 74, both hemispheres 5.4
2316 Male, age 76, right hemisphere 4.8
1817 Female, age 42, unknown 3.5
1944 Female, age 72, unknown 3.5
2224 Female, age 72, unknown 3.5
2667 Female, age 75, unknown 3.5
2825 Male, age 18, unknown 3.5
2407 Male, age 75, both hemispheres 3.2
1815 Male, age 53, unknown 3.0
2007 Male, age 72, unknown 3.0
1816 Male, age 51, unknown 2.4
Red nucleus
nTPM: 3.4
1865 Male, age 51, unknown 4.8
2725 Female, age 75, unknown 3.7
1954 Female, age 42, unknown 3.6
1821 Female, age 72, unknown 3.4
2503 Female, age 72, unknown 3.4
2227 Male, age 72, unknown 3.3
2769 Male, age 72, unknown 3.3
2785 Male, age 18, unknown 3.3
2823 Male, age 76, right hemisphere 3.3
2584 Male, age 75, left hemisphere 3.1
1904 Male, age 53, unknown 3.0
2588 Male, age 74, left hemisphere 2.6
Substantia nigra
nTPM: 4.1
2699 Male, age 18, unknown 7.1
2665 Male, age 74, both hemispheres 5.6
1851 Male, age 51, unknown 4.5
2241 Male, age 72, unknown 4.2
1916 Female, age 42, unknown 3.5
2590 Female, age 75, unknown 3.5
1889 Female, age 72, unknown 3.4
2409 Female, age 72, unknown 3.4
2583 Male, age 75, right hemisphere 3.3
1941 Male, age 53, unknown 2.9
Superior colliculus
nTPM: 3.6
2587 Male, age 74, left hemisphere 5.5
1995 Male, age 72, unknown 5.0
2668 Female, age 75, unknown 3.6
1913 Female, age 42, unknown 3.5
2087 Female, age 72, unknown 3.5
1839 Male, age 51, unknown 3.3
1796 Male, age 53, unknown 3.2
2664 Male, age 75, both hemispheres 3.2
1895 Male, age 76, right hemisphere 2.9
2261 Male, age 18, unknown 2.5
Ventral tegmental area
nTPM: 7.5
2021 Male, age 53, unknown 26.4
1942 Male, age 51, unknown 4.3
2218 Male, age 76, both hemispheres 3.9
1915 Female, age 42, unknown 3.5
2223 Female, age 72, unknown 3.5
2410 Female, age 72, unknown 3.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 174.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.0
Samples: 139

Max nTPM: 752.2
Min nTPM: 18.3
Std nTPM: 133.5
Median nTPM: 136.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 752.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 564.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 516.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 504.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 464.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 436.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 428.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 424.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 407.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 388.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 369.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 585.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 585.8
FF:10158-103A5 76 years, female 585.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.4
Pig sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 52.6
Min nTPM: 22.1
Sample A Female 52.6
Sample B Female 32.0
Sample C Male 28.1
Sample D Male 22.1
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 32.0
Min nTPM: 22.7
Sample B Female 28.4
Sample C Male 32.0
Sample D Male 22.7
Substantia nigra
nTPM: 55.4
Samples: 4

Max nTPM: 99.9
Min nTPM: 30.3
Sample A Female 36.7
Sample B Female 99.9
Sample C Male 30.3
Sample D Male 54.7
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 47.6
Min nTPM: 38.7
Sample A Female 39.3
Sample B Female 47.6
Sample C Male 38.7
Sample D Male 45.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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