BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:63.4 nTPM
HPA:63.4 nTPM
GTEx:71.8 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:67.9 nTPM
Mouse:108.0 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB034107
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.7
2846 Female, age 79, unknown 65.7
2290 Female, age 72, unknown 65.5
1781 Male, age 74, unknown 62.3
2288 Male, age 75, left hemisphere 62.3
1857 Female, age 85, left hemisphere 62.0
1854 Male, age 80, left hemisphere 60.2
2289 Male, age 61, right hemisphere 58.0
2481 Female, age 94, left hemisphere 57.8
Claustrum
nTPM: 58.6
1956 Male, age 74, unknown 61.2
2198 Male, age 80, both hemispheres 60.0
2491 Male, age 75, both hemispheres 59.5
2292 Female, age 85, both hemispheres 59.2
2392 Female, age 94, both hemispheres 58.5
2568 Male, age 61, both hemispheres 58.5
2284 Female, age 91, both hemispheres 57.6
2645 Female, age 72, unknown 57.2
2196 Female, age 79, unknown 55.9
Globus pallidus, externus
nTPM: 61.8
1996 Male, age 80, right hemisphere 64.5
2772 Female, age 79, unknown 63.9
2395 Male, age 75, both hemispheres 62.7
2646 Male, age 61, right hemisphere 59.5
2567 Female, age 72, unknown 58.2
Globus pallidus, internus
nTPM: 63.4
2287 Male, age 75, right hemisphere 66.5
2778 Female, age 91, both hemispheres 66.1
2483 Female, age 94, right hemisphere 63.5
1818 Male, age 74, unknown 62.9
2111 Female, age 85, right hemisphere 62.5
2037 Male, age 80, right hemisphere 62.2
2566 Female, age 72, unknown 59.9
Nucleus accumbens
nTPM: 61.7
2698 Female, age 72, unknown 64.1
1783 Male, age 74, unknown 64.0
2286 Male, age 75, left hemisphere 63.7
1806 Female, age 85, left hemisphere 63.6
1856 Female, age 91, right hemisphere 60.9
2391 Female, age 94, left hemisphere 60.2
2824 Male, age 61, right hemisphere 59.2
2732 Male, age 80, right hemisphere 58.3
Nucleus basalis of Meynert
nTPM: 60.2
2569 Male, age 61, both hemispheres 61.8
2393 Male, age 80, right hemisphere 60.3
2821 Male, age 75, both hemispheres 59.7
2484 Female, age 94, left hemisphere 58.9
Nucleus of the diagonal band
nTPM: 59.6
1812 Female, age 91, both hemispheres 61.6
2195 Female, age 85, both hemispheres 60.4
2775 Male, age 80, right hemisphere 60.0
2029 Male, age 61, right hemisphere 59.1
1979 Male, age 74, unknown 56.9
Olfactory tubercle
nTPM: 57.0
1846 Male, age 80, right hemisphere 58.4
1998 Female, age 91, both hemispheres 57.7
2856 Male, age 75, right hemisphere 56.6
2487 Female, age 94, left hemisphere 55.5
Putamen
nTPM: 60.8
2466 Female, age 79, unknown 65.6
1829 Male, age 74, unknown 62.5
1838 Male, age 80, right hemisphere 61.7
2482 Female, age 94, left hemisphere 60.1
1937 Female, age 91, right hemisphere 59.3
2489 Female, age 72, unknown 58.9
2647 Male, age 75, left hemisphere 57.6
Septal nuclei
nTPM: 58.3
1960 Male, age 74, unknown 60.3
2629 Female, age 94, right hemisphere 59.7
2031 Female, age 72, unknown 59.5
2059 Female, age 85, both hemispheres 59.0
2199 Male, age 80, right hemisphere 57.3
2009 Female, age 91, both hemispheres 57.0
2394 Male, age 61, left hemisphere 55.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 71.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.1
Samples: 246

Max nTPM: 146.7
Min nTPM: 32.5
Std nTPM: 15.8
Median nTPM: 64.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 146.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 142.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 138.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 114.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 113.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 108.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 106.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 100.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 99.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 99.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 95.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.5
Samples: 246

Max nTPM: 109.3
Min nTPM: 25.2
Std nTPM: 12.6
Median nTPM: 65.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 109.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 109.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 103.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 102.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 97.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 93.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 91.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 91.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 89.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 87.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 86.9
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Brain - Putamen (basal ganglia)
Average nTPM: 71.8
Samples: 205

Max nTPM: 125.4
Min nTPM: 41.8
Std nTPM: 12.9
Median nTPM: 70.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 125.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 109.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 108.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 107.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 102.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 99.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 99.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 98.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 98.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 97.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 96.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.6
FF:10164-103B2 76 years, female 18.6
Globus pallidus
Scaled Tags Per Million: 22.6
FF:10175-103C4 60 years, female 26.0
FF:10161-103A8 76 years, female 19.1
Nucleus accumbens
Scaled Tags Per Million: 20.5
FF:10037-101F1 23-56 years, mixed 20.5
Putamen
Scaled Tags Per Million: 26.5
FF:10176-103C5 60 years, female 26.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 67.9
Pig sample Sample description nTPM
Caudate
nTPM: 59.2
Samples: 4

Max nTPM: 72.1
Min nTPM: 50.0
Sample A Female 50.0
Sample B Female 62.8
Sample C Male 72.1
Sample D Male 51.8
Putamen
nTPM: 67.9
Samples: 4

Max nTPM: 79.4
Min nTPM: 53.3
Sample A Female 60.9
Sample B Female 53.3
Sample C Male 79.4
Sample D Male 77.9
Septum
nTPM: 50.9
Samples: 4

Max nTPM: 55.1
Min nTPM: 40.1
Sample A Female 55.1
Sample B Female 54.5
Sample C Male 40.1
Sample D Male 53.7
Ventral pallidum
nTPM: 54.3
Samples: 4

Max nTPM: 58.2
Min nTPM: 47.8
Sample A Female 47.8
Sample B Female 58.2
Sample C Male 53.5
Sample D Male 57.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 108.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 108.0
Samples: 4

Max nTPM: 111.3
Min nTPM: 104.0
Sample A Male 106.9
Sample B Male 111.3
Sample C Female 109.9
Sample D Female 104.0
Septum
nTPM: 105.8
Samples: 4

Max nTPM: 115.0
Min nTPM: 91.2
Sample A Male 91.2
Sample B Male 111.1
Sample C Female 115.0
Sample D Female 106.0
Ventral forebrain
nTPM: 101.7
Samples: 4

Max nTPM: 110.2
Min nTPM: 97.0
Sample A Male 97.0
Sample B Male 99.4
Sample C Female 110.2
Sample D Female 100.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
69080047 Antisense, RP_050324_01_F10, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 3.0
69080047 Antisense, RP_050324_01_F10, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

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