BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:7.2 nTPM
HPA:7.2 nTPM
GTEx:76.4 nTPM
FANTOM5:66.4 Scaled Tags Per Million
Pig:80.8 nTPM
Mouse:108.4 nTPM
Allen mouse:2.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA073355
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.7
1781 Male, age 74, unknown 13.5
2290 Female, age 72, unknown 3.0
1854 Male, age 80, left hemisphere 2.6
1857 Female, age 85, left hemisphere 2.6
2288 Male, age 75, left hemisphere 2.6
2289 Male, age 61, right hemisphere 2.5
2481 Female, age 94, left hemisphere 2.0
2846 Female, age 79, unknown 1.2
Claustrum
nTPM: 7.2
2196 Female, age 79, unknown 41.7
2568 Male, age 61, both hemispheres 3.9
2645 Female, age 72, unknown 3.8
2198 Male, age 80, both hemispheres 3.1
2284 Female, age 91, both hemispheres 2.7
2292 Female, age 85, both hemispheres 2.6
2491 Male, age 75, both hemispheres 2.6
1956 Male, age 74, unknown 2.5
2392 Female, age 94, both hemispheres 1.8
Globus pallidus, externus
nTPM: 2.7
2646 Male, age 61, right hemisphere 4.3
2567 Female, age 72, unknown 3.0
1996 Male, age 80, right hemisphere 2.6
2395 Male, age 75, both hemispheres 2.6
2772 Female, age 79, unknown 1.2
Globus pallidus, internus
nTPM: 2.5
2566 Female, age 72, unknown 2.9
2778 Female, age 91, both hemispheres 2.7
2111 Female, age 85, right hemisphere 2.6
2287 Male, age 75, right hemisphere 2.6
2483 Female, age 94, right hemisphere 2.4
2037 Male, age 80, right hemisphere 2.3
1818 Male, age 74, unknown 2.0
Nucleus accumbens
nTPM: 2.7
1783 Male, age 74, unknown 3.1
2286 Male, age 75, left hemisphere 3.0
2824 Male, age 61, right hemisphere 3.0
2698 Female, age 72, unknown 2.8
1856 Female, age 91, right hemisphere 2.7
1806 Female, age 85, left hemisphere 2.6
2732 Male, age 80, right hemisphere 2.1
2391 Female, age 94, left hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 2.8
2569 Male, age 61, both hemispheres 4.3
2821 Male, age 75, both hemispheres 2.6
2393 Male, age 80, right hemisphere 2.2
2484 Female, age 94, left hemisphere 2.1
Nucleus of the diagonal band
nTPM: 2.8
2775 Male, age 80, right hemisphere 3.4
2029 Male, age 61, right hemisphere 3.2
1812 Female, age 91, both hemispheres 2.7
2195 Female, age 85, both hemispheres 2.6
1979 Male, age 74, unknown 2.0
Olfactory tubercle
nTPM: 2.7
1846 Male, age 80, right hemisphere 2.8
1998 Female, age 91, both hemispheres 2.7
2487 Female, age 94, left hemisphere 2.6
2856 Male, age 75, right hemisphere 2.6
Putamen
nTPM: 2.3
1937 Female, age 91, right hemisphere 2.7
2489 Female, age 72, unknown 2.7
2647 Male, age 75, left hemisphere 2.6
1838 Male, age 80, right hemisphere 2.5
2482 Female, age 94, left hemisphere 2.1
1829 Male, age 74, unknown 2.0
2466 Female, age 79, unknown 1.4
Septal nuclei
nTPM: 3.0
2629 Female, age 94, right hemisphere 3.8
2031 Female, age 72, unknown 3.6
2009 Female, age 91, both hemispheres 3.4
2394 Male, age 61, left hemisphere 3.2
2059 Female, age 85, both hemispheres 2.6
2199 Male, age 80, right hemisphere 2.4
1960 Male, age 74, unknown 2.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 76.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.2
Samples: 246

Max nTPM: 107.1
Min nTPM: 39.5
Std nTPM: 11.0
Median nTPM: 68.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 107.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 105.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 103.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 102.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 100.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 98.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 92.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 92.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 92.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 90.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 90.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 76.4
Samples: 246

Max nTPM: 147.3
Min nTPM: 34.6
Std nTPM: 15.2
Median nTPM: 74.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 147.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 128.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 124.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 123.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 116.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 116.1
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 110.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 106.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 106.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 106.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 105.8
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Brain - Putamen (basal ganglia)
Average nTPM: 73.3
Samples: 205

Max nTPM: 112.3
Min nTPM: 52.7
Std nTPM: 10.5
Median nTPM: 73.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 112.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 101.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 97.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 96.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 96.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 96.4
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 96.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 94.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 93.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 93.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 92.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.5
FF:10164-103B2 76 years, female 46.5
Globus pallidus
Scaled Tags Per Million: 29.1
FF:10175-103C4 60 years, female 29.2
FF:10161-103A8 76 years, female 29.0
Nucleus accumbens
Scaled Tags Per Million: 47.8
FF:10037-101F1 23-56 years, mixed 47.8
Putamen
Scaled Tags Per Million: 66.4
FF:10176-103C5 60 years, female 66.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 80.8
Pig sample Sample description nTPM
Caudate
nTPM: 80.8
Samples: 4

Max nTPM: 101.3
Min nTPM: 59.7
Sample A Female 59.7
Sample B Female 87.2
Sample C Male 101.3
Sample D Male 75.1
Putamen
nTPM: 78.7
Samples: 4

Max nTPM: 96.9
Min nTPM: 60.1
Sample A Female 60.1
Sample B Female 67.5
Sample C Male 90.4
Sample D Male 96.9
Septum
nTPM: 72.3
Samples: 4

Max nTPM: 87.0
Min nTPM: 66.3
Sample A Female 68.4
Sample B Female 66.3
Sample C Male 87.0
Sample D Male 67.4
Ventral pallidum
nTPM: 74.2
Samples: 4

Max nTPM: 92.7
Min nTPM: 64.5
Sample A Female 65.1
Sample B Female 64.5
Sample C Male 92.7
Sample D Male 74.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 108.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 108.4
Samples: 4

Max nTPM: 123.0
Min nTPM: 96.9
Sample A Male 102.2
Sample B Male 123.0
Sample C Female 96.9
Sample D Female 111.6
Septum
nTPM: 90.7
Samples: 4

Max nTPM: 93.3
Min nTPM: 87.4
Sample A Male 87.4
Sample B Male 89.1
Sample C Female 93.3
Sample D Female 92.9
Ventral forebrain
nTPM: 104.2
Samples: 4

Max nTPM: 118.7
Min nTPM: 96.1
Sample A Male 96.1
Sample B Male 101.3
Sample C Female 118.7
Sample D Female 100.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
68269682 Antisense, RP_041129_02_A08, Mouse strain C57BL/6J (56 days, male) 2.2
Pallidum
Expression energy: 2.5
68269682 Antisense, RP_041129_02_A08, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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