MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.5 nTPM
HPA:62.5 nTPM
GTEx:62.6 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:64.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.8
2019 Male, age 18, unknown 65.2
2411 Female, age 72, unknown 61.5
1870 Female, age 42, unknown 60.9
1827 Male, age 72, unknown 59.2
1830 Male, age 51, unknown 59.1
1833 Male, age 53, unknown 59.0
2828 Female, age 72, unknown 58.7
2666 Male, age 74, left hemisphere 55.3
2219 Male, age 76, both hemispheres 55.0
2586 Male, age 75, left hemisphere 54.4
Dorsal raphe nucleus
nTPM: 62.5
2298 Female, age 72, unknown 65.7
2016 Female, age 72, unknown 62.9
1828 Male, age 53, unknown 62.0
2047 Male, age 72, unknown 61.1
2750 Male, age 76, both hemispheres 60.9
Inferior colliculus
nTPM: 61.2
2097 Female, age 72, unknown 65.7
1890 Male, age 53, unknown 62.1
1848 Female, age 42, unknown 61.2
2849 Male, age 72, unknown 55.8
Median raphe nucleus
nTPM: 56.4
2220 Male, age 76, midline 56.4
Pedunculopontine tegmental nucleus
nTPM: 59.1
1921 Female, age 85, both hemispheres 60.3
2334 Male, age 80, both hemispheres 60.1
2338 Male, age 61, both hemispheres 56.8
Periaquaductal grey, anterior
nTPM: 59.8
2502 Female, age 75, unknown 61.1
1947 Male, age 18, unknown 60.6
1795 Male, age 51, unknown 57.9
Periaquaductal grey, dorsal
nTPM: 58.7
2464 Female, age 72, unknown 60.5
1840 Male, age 53, unknown 59.1
2850 Male, age 76, both hemispheres 59.1
1831 Male, age 72, unknown 56.3
Periaquaductal grey, lateral
nTPM: 60.1
2272 Male, age 74, both hemispheres 62.7
2140 Male, age 76, both hemispheres 59.3
2053 Male, age 18, unknown 58.2
Pretectal area
nTPM: 61.6
2667 Female, age 75, unknown 65.9
2273 Male, age 74, both hemispheres 65.7
2007 Male, age 72, unknown 63.0
1817 Female, age 42, unknown 62.5
2316 Male, age 76, right hemisphere 62.2
1944 Female, age 72, unknown 61.6
1816 Male, age 51, unknown 61.5
1815 Male, age 53, unknown 60.3
2224 Female, age 72, unknown 60.0
2825 Male, age 18, unknown 58.5
2407 Male, age 75, both hemispheres 56.6
Red nucleus
nTPM: 61.3
1821 Female, age 72, unknown 67.0
1954 Female, age 42, unknown 64.4
2823 Male, age 76, right hemisphere 63.5
1904 Male, age 53, unknown 63.4
1865 Male, age 51, unknown 62.8
2769 Male, age 72, unknown 62.2
2227 Male, age 72, unknown 61.4
2785 Male, age 18, unknown 61.4
2503 Female, age 72, unknown 60.9
2725 Female, age 75, unknown 57.7
2588 Male, age 74, left hemisphere 56.4
2584 Male, age 75, left hemisphere 54.4
Substantia nigra
nTPM: 60.1
2241 Male, age 72, unknown 65.7
1889 Female, age 72, unknown 63.4
2409 Female, age 72, unknown 61.5
1851 Male, age 51, unknown 61.4
1916 Female, age 42, unknown 61.3
2590 Female, age 75, unknown 58.8
1941 Male, age 53, unknown 58.6
2699 Male, age 18, unknown 57.6
2665 Male, age 74, both hemispheres 56.4
2583 Male, age 75, right hemisphere 56.1
Superior colliculus
nTPM: 59.9
1895 Male, age 76, right hemisphere 62.2
2587 Male, age 74, left hemisphere 61.8
1995 Male, age 72, unknown 60.6
1913 Female, age 42, unknown 60.5
2087 Female, age 72, unknown 60.3
2261 Male, age 18, unknown 59.8
2668 Female, age 75, unknown 59.3
1839 Male, age 51, unknown 58.8
1796 Male, age 53, unknown 58.3
2664 Male, age 75, both hemispheres 56.9
Ventral tegmental area
nTPM: 59.6
2410 Female, age 72, unknown 63.9
1915 Female, age 42, unknown 60.1
2021 Male, age 53, unknown 59.7
1942 Male, age 51, unknown 58.8
2218 Male, age 76, both hemispheres 57.6
2223 Female, age 72, unknown 57.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.6
Samples: 139

Max nTPM: 105.2
Min nTPM: 38.0
Std nTPM: 13.2
Median nTPM: 60.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 105.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 103.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 99.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 97.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 95.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 90.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 87.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 86.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 80.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.2
FF:10158-103A5 76 years, female 26.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.6
Pig sample Sample description nTPM
Midbrain
nTPM: 58.3
Samples: 4

Max nTPM: 68.9
Min nTPM: 52.9
Sample A Female 68.9
Sample B Female 58.4
Sample C Male 52.9
Sample D Male 53.1
Periaqueductal gray
nTPM: 54.0
Samples: 3

Max nTPM: 57.6
Min nTPM: 49.6
Sample B Female 54.8
Sample C Male 57.6
Sample D Male 49.6
Substantia nigra
nTPM: 56.0
Samples: 4

Max nTPM: 73.1
Min nTPM: 47.1
Sample A Female 73.1
Sample B Female 52.5
Sample C Male 51.3
Sample D Male 47.1
Superior colliculi
nTPM: 64.6
Samples: 4

Max nTPM: 83.1
Min nTPM: 53.6
Sample A Female 83.1
Sample B Female 54.4
Sample C Male 67.3
Sample D Male 53.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.