MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.4 nTPM
HPA:36.4 nTPM
GTEx:65.1 nTPM
FANTOM5:127.5 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:11.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
1830 Male, age 51, unknown 24.3
1870 Female, age 42, unknown 24.1
2019 Male, age 18, unknown 24.1
2828 Female, age 72, unknown 24.1
2411 Female, age 72, unknown 23.8
1833 Male, age 53, unknown 23.4
1827 Male, age 72, unknown 22.6
2219 Male, age 76, both hemispheres 22.6
2666 Male, age 74, left hemisphere 22.2
2586 Male, age 75, left hemisphere 21.0
Dorsal raphe nucleus
nTPM: 25.6
2298 Female, age 72, unknown 29.3
2016 Female, age 72, unknown 26.5
2750 Male, age 76, both hemispheres 25.1
1828 Male, age 53, unknown 24.1
2047 Male, age 72, unknown 23.2
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 25.7
1890 Male, age 53, unknown 24.2
2849 Male, age 72, unknown 23.5
1848 Female, age 42, unknown 23.3
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Pedunculopontine tegmental nucleus
nTPM: 36.4
2338 Male, age 61, both hemispheres 61.8
2334 Male, age 80, both hemispheres 25.5
1921 Female, age 85, both hemispheres 21.9
Periaquaductal grey, anterior
nTPM: 23.0
1795 Male, age 51, unknown 24.3
1947 Male, age 18, unknown 22.5
2502 Female, age 75, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 24.7
1831 Male, age 72, unknown 26.6
2850 Male, age 76, both hemispheres 24.8
1840 Male, age 53, unknown 24.4
2464 Female, age 72, unknown 23.0
Periaquaductal grey, lateral
nTPM: 25.1
2272 Male, age 74, both hemispheres 26.3
2053 Male, age 18, unknown 24.6
2140 Male, age 76, both hemispheres 24.2
Pretectal area
nTPM: 24.7
2273 Male, age 74, both hemispheres 27.4
2316 Male, age 76, right hemisphere 26.9
2224 Female, age 72, unknown 26.4
2407 Male, age 75, both hemispheres 25.4
1944 Female, age 72, unknown 25.2
1817 Female, age 42, unknown 24.9
1815 Male, age 53, unknown 24.8
2825 Male, age 18, unknown 23.5
2007 Male, age 72, unknown 23.4
2667 Female, age 75, unknown 22.1
1816 Male, age 51, unknown 21.7
Red nucleus
nTPM: 24.3
2725 Female, age 75, unknown 27.9
1865 Male, age 51, unknown 26.6
2503 Female, age 72, unknown 26.1
2823 Male, age 76, right hemisphere 25.0
1904 Male, age 53, unknown 24.5
2769 Male, age 72, unknown 24.4
2227 Male, age 72, unknown 24.1
1821 Female, age 72, unknown 24.0
2785 Male, age 18, unknown 23.4
1954 Female, age 42, unknown 23.2
2584 Male, age 75, left hemisphere 21.8
2588 Male, age 74, left hemisphere 20.6
Substantia nigra
nTPM: 26.4
2590 Female, age 75, unknown 32.1
2699 Male, age 18, unknown 30.5
2665 Male, age 74, both hemispheres 28.6
2241 Male, age 72, unknown 25.6
1916 Female, age 42, unknown 25.5
1851 Male, age 51, unknown 25.4
1941 Male, age 53, unknown 25.3
1889 Female, age 72, unknown 24.3
2583 Male, age 75, right hemisphere 23.6
2409 Female, age 72, unknown 23.3
Superior colliculus
nTPM: 24.2
1913 Female, age 42, unknown 28.3
2587 Male, age 74, left hemisphere 26.9
1995 Male, age 72, unknown 26.5
2087 Female, age 72, unknown 24.1
1796 Male, age 53, unknown 23.0
1895 Male, age 76, right hemisphere 23.0
1839 Male, age 51, unknown 22.9
2664 Male, age 75, both hemispheres 22.7
2261 Male, age 18, unknown 22.5
2668 Female, age 75, unknown 22.0
Ventral tegmental area
nTPM: 25.0
2021 Male, age 53, unknown 26.6
1915 Female, age 42, unknown 26.2
2218 Male, age 76, both hemispheres 25.0
1942 Male, age 51, unknown 24.9
2410 Female, age 72, unknown 24.5
2223 Female, age 72, unknown 23.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 139

Max nTPM: 314.9
Min nTPM: 6.4
Std nTPM: 58.6
Median nTPM: 45.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 314.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 282.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 279.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 230.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 220.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 199.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 194.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 179.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 170.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 169.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 145.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.5
FF:10158-103A5 76 years, female 127.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.3
Pig sample Sample description nTPM
Midbrain
nTPM: 45.3
Samples: 4

Max nTPM: 72.1
Min nTPM: 31.0
Sample A Female 31.0
Sample B Female 72.1
Sample C Male 42.3
Sample D Male 35.8
Periaqueductal gray
nTPM: 54.3
Samples: 3

Max nTPM: 59.2
Min nTPM: 45.2
Sample B Female 59.2
Sample C Male 58.5
Sample D Male 45.2
Substantia nigra
nTPM: 49.2
Samples: 4

Max nTPM: 54.1
Min nTPM: 46.8
Sample A Female 54.1
Sample B Female 49.0
Sample C Male 46.8
Sample D Male 47.0
Superior colliculi
nTPM: 41.5
Samples: 4

Max nTPM: 48.6
Min nTPM: 29.0
Sample A Female 41.8
Sample B Female 29.0
Sample C Male 48.6
Sample D Male 46.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 14.1
Min nTPM: 9.1
Sample A Male 12.3
Sample B Male 14.1
Sample C Female 9.4
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
75080249 Antisense, RP_060412_06_H07, Mouse strain C57BL/6J (56 days, male) 0.1
72081677 Antisense, RP_051012_04_H10, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.