BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:45.7 nTPM
HPA:45.7 nTPM
GTEx:31.2 nTPM
FANTOM5:55.0 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:39.5 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043485Antibody HPA050334
Glial cells MediumLow
Neuronal cells HighLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.3
2481 Female, age 94, left hemisphere 46.5
2289 Male, age 61, right hemisphere 43.0
2288 Male, age 75, left hemisphere 42.1
2290 Female, age 72, unknown 42.1
1781 Male, age 74, unknown 41.9
1854 Male, age 80, left hemisphere 41.3
2846 Female, age 79, unknown 41.1
1857 Female, age 85, left hemisphere 40.3
Claustrum
nTPM: 40.2
2292 Female, age 85, both hemispheres 42.7
1956 Male, age 74, unknown 42.5
2196 Female, age 79, unknown 41.5
2284 Female, age 91, both hemispheres 40.1
2198 Male, age 80, both hemispheres 39.5
2491 Male, age 75, both hemispheres 39.4
2392 Female, age 94, both hemispheres 39.3
2568 Male, age 61, both hemispheres 39.0
2645 Female, age 72, unknown 38.0
Globus pallidus, externus
nTPM: 45.5
1996 Male, age 80, right hemisphere 48.8
2772 Female, age 79, unknown 48.5
2395 Male, age 75, both hemispheres 45.1
2646 Male, age 61, right hemisphere 44.2
2567 Female, age 72, unknown 40.8
Globus pallidus, internus
nTPM: 45.7
2287 Male, age 75, right hemisphere 49.4
2778 Female, age 91, both hemispheres 48.2
2037 Male, age 80, right hemisphere 45.8
2483 Female, age 94, right hemisphere 45.6
1818 Male, age 74, unknown 45.3
2111 Female, age 85, right hemisphere 44.3
2566 Female, age 72, unknown 41.2
Nucleus accumbens
nTPM: 42.3
1856 Female, age 91, right hemisphere 42.8
2286 Male, age 75, left hemisphere 42.8
2824 Male, age 61, right hemisphere 42.7
2391 Female, age 94, left hemisphere 42.4
1806 Female, age 85, left hemisphere 42.3
2698 Female, age 72, unknown 42.1
1783 Male, age 74, unknown 41.9
2732 Male, age 80, right hemisphere 41.0
Nucleus basalis of Meynert
nTPM: 41.9
2569 Male, age 61, both hemispheres 44.3
2393 Male, age 80, right hemisphere 41.4
2484 Female, age 94, left hemisphere 41.0
2821 Male, age 75, both hemispheres 40.8
Nucleus of the diagonal band
nTPM: 40.0
1812 Female, age 91, both hemispheres 42.6
2029 Male, age 61, right hemisphere 40.6
2775 Male, age 80, right hemisphere 39.7
1979 Male, age 74, unknown 39.0
2195 Female, age 85, both hemispheres 38.2
Olfactory tubercle
nTPM: 39.5
2856 Male, age 75, right hemisphere 40.5
1846 Male, age 80, right hemisphere 39.9
1998 Female, age 91, both hemispheres 39.9
2487 Female, age 94, left hemisphere 37.5
Putamen
nTPM: 41.3
2482 Female, age 94, left hemisphere 43.4
2466 Female, age 79, unknown 41.9
1829 Male, age 74, unknown 41.7
1838 Male, age 80, right hemisphere 41.0
1937 Female, age 91, right hemisphere 41.0
2647 Male, age 75, left hemisphere 40.9
2489 Female, age 72, unknown 39.1
Septal nuclei
nTPM: 39.8
2031 Female, age 72, unknown 40.6
2009 Female, age 91, both hemispheres 40.4
2199 Male, age 80, right hemisphere 39.8
2394 Male, age 61, left hemisphere 39.7
1960 Male, age 74, unknown 39.5
2629 Female, age 94, right hemisphere 39.5
2059 Female, age 85, both hemispheres 39.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.8
Samples: 246

Max nTPM: 55.4
Min nTPM: 15.4
Std nTPM: 5.9
Median nTPM: 29.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 55.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 50.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 50.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 45.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 44.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 43.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 42.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 42.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 41.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 41.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 41.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.5
Samples: 246

Max nTPM: 56.2
Min nTPM: 6.2
Std nTPM: 6.1
Median nTPM: 27.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 56.2
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 44.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 43.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 41.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 40.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 40.0
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 39.4
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 38.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 38.7
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 38.1
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 37.7
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Brain - Putamen (basal ganglia)
Average nTPM: 31.2
Samples: 205

Max nTPM: 65.8
Min nTPM: 15.8
Std nTPM: 6.9
Median nTPM: 30.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 65.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 52.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 49.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 46.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 45.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 45.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 44.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 44.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 43.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 42.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 42.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.5
FF:10164-103B2 76 years, female 44.5
Globus pallidus
Scaled Tags Per Million: 55.0
FF:10175-103C4 60 years, female 56.8
FF:10161-103A8 76 years, female 53.3
Nucleus accumbens
Scaled Tags Per Million: 38.6
FF:10037-101F1 23-56 years, mixed 38.6
Putamen
Scaled Tags Per Million: 47.4
FF:10176-103C5 60 years, female 47.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Caudate
nTPM: 11.6
Samples: 4

Max nTPM: 14.0
Min nTPM: 9.7
Sample A Female 11.4
Sample B Female 11.3
Sample C Male 14.0
Sample D Male 9.7
Putamen
nTPM: 15.6
Samples: 4

Max nTPM: 19.1
Min nTPM: 10.4
Sample A Female 19.1
Sample B Female 10.4
Sample C Male 17.8
Sample D Male 15.0
Septum
nTPM: 13.1
Samples: 4

Max nTPM: 16.3
Min nTPM: 11.7
Sample A Female 16.3
Sample B Female 12.1
Sample C Male 12.4
Sample D Male 11.7
Ventral pallidum
nTPM: 12.9
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 15.7
Sample C Male 13.5
Sample D Male 11.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 39.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.6
Samples: 4

Max nTPM: 42.2
Min nTPM: 36.8
Sample A Male 36.8
Sample B Male 37.4
Sample C Female 41.8
Sample D Female 42.2
Septum
nTPM: 37.2
Samples: 4

Max nTPM: 40.1
Min nTPM: 35.0
Sample A Male 38.5
Sample B Male 40.1
Sample C Female 35.1
Sample D Female 35.0
Ventral forebrain
nTPM: 38.2
Samples: 4

Max nTPM: 39.0
Min nTPM: 37.0
Sample A Male 37.7
Sample B Male 37.0
Sample C Female 39.0
Sample D Female 39.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68410428 Antisense, RP_041214_01_H03, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.1
68410428 Antisense, RP_041214_01_H03, Mouse strain C57BL/6J (56 days, male) 1.1

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