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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:10.0 nTPM
HPA:10.0 nTPM
GTEx:212.9 nTPM
FANTOM5:241.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 10.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 8.0
2048 Male, age 55, midline 12.1
2194 Female, age 79, both hemispheres 7.7
2816 Male, age 47, midline 7.6
1981 Female, age 72, midline 6.7
2565 Male, age 75, midline 6.1
Cervical spinal cord, dorsal horn
nTPM: 7.4
1877 Male, age 55, unknown 10.1
2069 Male, age 47, both hemispheres 8.3
2173 Female, age 72, unknown 7.8
2721 Male, age 90, both hemispheres 7.1
2297 Male, age 75, both hemispheres 6.1
2296 Male, age 66, both hemispheres 5.2
Cervical spinal cord, ventral horn
nTPM: 10.0
2809 Male, age 90, both hemispheres 18.7
2295 Male, age 66, both hemispheres 12.3
2068 Male, age 55, unknown 9.8
2098 Female, age 72, unknown 7.8
2480 Male, age 75, both hemispheres 6.1
2820 Female, age 79, both hemispheres 5.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 212.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 212.9
Samples: 159

Max nTPM: 449.2
Min nTPM: 74.0
Std nTPM: 71.3
Median nTPM: 202.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 449.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 426.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 390.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 369.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 363.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 359.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 347.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 345.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 344.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 339.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 337.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 328.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 324.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 324.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 323.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 321.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 306.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 306.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 303.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 302.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 295.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 294.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 291.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 290.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 289.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 285.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 285.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 284.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 284.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 282.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 281.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 280.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 275.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 271.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 266.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 263.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 257.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 255.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 253.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 253.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 252.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 250.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 249.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 248.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 247.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 246.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 246.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 245.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 245.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 245.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 237.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 237.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 236.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 231.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 231.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 230.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 229.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 227.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 226.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 225.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 224.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 224.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 223.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 223.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 222.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 218.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 217.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 213.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 210.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 209.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 208.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 207.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 207.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 207.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 206.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 206.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 205.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 204.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 204.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 202.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 200.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 200.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 200.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 198.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 197.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 195.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 193.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 193.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 193.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 192.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 189.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 188.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 188.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 187.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 187.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 184.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 184.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 183.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 182.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 182.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 181.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 180.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 180.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 179.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 177.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 176.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 176.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 175.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 174.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 173.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 173.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 172.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 170.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 169.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 165.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 164.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 164.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 160.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 160.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 160.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 159.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 155.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 155.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 155.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 152.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 150.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 148.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 148.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 147.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 146.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 143.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 143.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 142.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 141.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 138.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 138.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 136.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 130.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 130.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 128.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 127.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 126.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 125.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 125.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 123.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 122.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 120.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 120.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 119.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 111.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 110.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 108.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 105.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 101.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 97.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 85.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 74.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 241.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 241.2
FF:10159-103A6 76 years, female 315.7
FF:10181-103D1 60 years, female 166.6

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