BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.2 nTPM
HPA:1.2 nTPM
GTEx:1.0 nTPM
FANTOM5:5.2 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:1.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA073478
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.4
2289 Male, age 61, right hemisphere 0.8
2290 Female, age 72, unknown 0.7
1857 Female, age 85, left hemisphere 0.6
2288 Male, age 75, left hemisphere 0.6
1854 Male, age 80, left hemisphere 0.5
2846 Female, age 79, unknown 0.4
1781 Male, age 74, unknown 0.1
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.6
2392 Female, age 94, both hemispheres 1.1
2284 Female, age 91, both hemispheres 0.8
2292 Female, age 85, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
1956 Male, age 74, unknown 0.4
2196 Female, age 79, unknown 0.3
2198 Male, age 80, both hemispheres 0.2
Globus pallidus, externus
nTPM: 0.1
2567 Female, age 72, unknown 0.3
2395 Male, age 75, both hemispheres 0.1
1996 Male, age 80, right hemisphere 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.3
2111 Female, age 85, right hemisphere 1.0
2287 Male, age 75, right hemisphere 0.6
2778 Female, age 91, both hemispheres 0.4
2566 Female, age 72, unknown 0.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.7
2824 Male, age 61, right hemisphere 1.5
2391 Female, age 94, left hemisphere 0.7
1806 Female, age 85, left hemisphere 0.6
2286 Male, age 75, left hemisphere 0.6
2732 Male, age 80, right hemisphere 0.6
1783 Male, age 74, unknown 0.5
1856 Female, age 91, right hemisphere 0.5
2698 Female, age 72, unknown 0.3
Nucleus basalis of Meynert
nTPM: 0.2
2393 Male, age 80, right hemisphere 0.9
2484 Female, age 94, left hemisphere 0.1
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 1.2
2195 Female, age 85, both hemispheres 1.8
2029 Male, age 61, right hemisphere 1.4
1979 Male, age 74, unknown 1.3
2775 Male, age 80, right hemisphere 1.1
1812 Female, age 91, both hemispheres 0.4
Olfactory tubercle
nTPM: 1.1
1998 Female, age 91, both hemispheres 1.3
2487 Female, age 94, left hemisphere 1.3
1846 Male, age 80, right hemisphere 1.0
2856 Male, age 75, right hemisphere 0.9
Putamen
nTPM: 0.5
1838 Male, age 80, right hemisphere 1.0
1829 Male, age 74, unknown 0.7
2466 Female, age 79, unknown 0.7
1937 Female, age 91, right hemisphere 0.6
2489 Female, age 72, unknown 0.4
2482 Female, age 94, left hemisphere 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 0.9
1960 Male, age 74, unknown 1.3
2009 Female, age 91, both hemispheres 1.1
2059 Female, age 85, both hemispheres 1.1
2629 Female, age 94, right hemisphere 0.8
2031 Female, age 72, unknown 0.7
2199 Male, age 80, right hemisphere 0.7
2394 Male, age 61, left hemisphere 0.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.9
Samples: 246

Max nTPM: 2.6
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 2.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.0
Samples: 246

Max nTPM: 3.2
Min nTPM: 0.0
Std nTPM: 0.5
Median nTPM: 1.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 3.2
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 2.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 2.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 2.3
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 2.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 2.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 2.1
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 2.0
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 2.0
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 2.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 2.0
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Brain - Putamen (basal ganglia)
Average nTPM: 0.7
Samples: 205

Max nTPM: 2.7
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 0.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 2.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 2.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 1.7
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 1.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 1.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 1.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 1.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 1.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 1.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 1.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.2
FF:10164-103B2 76 years, female 5.2
Globus pallidus
Scaled Tags Per Million: 1.1
FF:10161-103A8 76 years, female 1.4
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 3.3
FF:10037-101F1 23-56 years, mixed 3.3
Putamen
Scaled Tags Per Million: 5.2
FF:10176-103C5 60 years, female 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
1254 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 3.0
1253 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 0.6
79354792 Antisense, RP_070813_03_A12, Mouse strain C57BL/6J (56 days, male) 0.6
Striatum
Expression energy: 1.8
1254 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 3.0
1253 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 0.6
79354792 Antisense, RP_070813_03_A12, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 1.6
1254 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 2.7
1253 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 0.6
79354792 Antisense, RP_070813_03_A12, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 1.6
1254 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 2.7
1253 Antisense, RP_Baylor_102707, Mouse strain C57BL/6J (56 days, male) 0.6
79354792 Antisense, RP_070813_03_A12, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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