MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:232.8 nTPM
HPA:232.8 nTPM
GTEx:43.0 nTPM
FANTOM5:167.8 Scaled Tags Per Million
Pig:74.8 nTPM
Mouse:115.0 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 232.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.8
1830 Male, age 51, unknown 228.8
2411 Female, age 72, unknown 211.5
1833 Male, age 53, unknown 202.3
2586 Male, age 75, left hemisphere 178.5
1870 Female, age 42, unknown 152.2
2828 Female, age 72, unknown 150.8
2019 Male, age 18, unknown 146.2
2219 Male, age 76, both hemispheres 133.5
2666 Male, age 74, left hemisphere 93.6
1827 Male, age 72, unknown 90.1
Dorsal raphe nucleus
nTPM: 98.0
2750 Male, age 76, both hemispheres 264.6
2016 Female, age 72, unknown 103.0
1828 Male, age 53, unknown 73.2
2047 Male, age 72, unknown 27.7
2298 Female, age 72, unknown 21.4
Inferior colliculus
nTPM: 76.7
2849 Male, age 72, unknown 102.5
1848 Female, age 42, unknown 83.0
1890 Male, age 53, unknown 79.3
2097 Female, age 72, unknown 42.1
Median raphe nucleus
nTPM: 75.3
2220 Male, age 76, midline 75.3
Pedunculopontine tegmental nucleus
nTPM: 118.2
2334 Male, age 80, both hemispheres 144.8
2338 Male, age 61, both hemispheres 111.1
1921 Female, age 85, both hemispheres 98.5
Periaquaductal grey, anterior
nTPM: 59.1
1947 Male, age 18, unknown 63.8
1795 Male, age 51, unknown 59.5
2502 Female, age 75, unknown 54.0
Periaquaductal grey, dorsal
nTPM: 39.6
2464 Female, age 72, unknown 97.0
1831 Male, age 72, unknown 49.8
2850 Male, age 76, both hemispheres 7.6
1840 Male, age 53, unknown 3.9
Periaquaductal grey, lateral
nTPM: 58.5
2272 Male, age 74, both hemispheres 114.3
2053 Male, age 18, unknown 55.1
2140 Male, age 76, both hemispheres 6.2
Pretectal area
nTPM: 70.3
2316 Male, age 76, right hemisphere 125.5
1815 Male, age 53, unknown 123.1
2407 Male, age 75, both hemispheres 95.6
2825 Male, age 18, unknown 89.3
2007 Male, age 72, unknown 77.9
1817 Female, age 42, unknown 73.7
2273 Male, age 74, both hemispheres 70.7
2224 Female, age 72, unknown 56.6
1944 Female, age 72, unknown 24.9
1816 Male, age 51, unknown 18.2
2667 Female, age 75, unknown 18.0
Red nucleus
nTPM: 232.8
2227 Male, age 72, unknown 282.5
2769 Male, age 72, unknown 278.6
1904 Male, age 53, unknown 270.8
2823 Male, age 76, right hemisphere 265.5
2503 Female, age 72, unknown 257.9
2785 Male, age 18, unknown 254.7
2588 Male, age 74, left hemisphere 216.6
1865 Male, age 51, unknown 212.8
1821 Female, age 72, unknown 211.4
2725 Female, age 75, unknown 198.5
1954 Female, age 42, unknown 187.9
2584 Male, age 75, left hemisphere 157.0
Substantia nigra
nTPM: 86.0
2590 Female, age 75, unknown 169.3
2583 Male, age 75, right hemisphere 160.7
1851 Male, age 51, unknown 113.9
1889 Female, age 72, unknown 97.7
2699 Male, age 18, unknown 91.0
1941 Male, age 53, unknown 58.8
2409 Female, age 72, unknown 49.2
1916 Female, age 42, unknown 47.3
2665 Male, age 74, both hemispheres 43.4
2241 Male, age 72, unknown 28.5
Superior colliculus
nTPM: 116.9
1995 Male, age 72, unknown 213.4
1913 Female, age 42, unknown 196.8
1839 Male, age 51, unknown 138.8
2668 Female, age 75, unknown 136.9
2587 Male, age 74, left hemisphere 120.7
1895 Male, age 76, right hemisphere 114.2
1796 Male, age 53, unknown 99.4
2664 Male, age 75, both hemispheres 68.0
2261 Male, age 18, unknown 47.6
2087 Female, age 72, unknown 33.3
Ventral tegmental area
nTPM: 114.8
2223 Female, age 72, unknown 196.2
2410 Female, age 72, unknown 134.2
2218 Male, age 76, both hemispheres 97.5
2021 Male, age 53, unknown 92.4
1942 Male, age 51, unknown 89.3
1915 Female, age 42, unknown 79.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.0
Samples: 139

Max nTPM: 196.9
Min nTPM: 3.4
Std nTPM: 31.0
Median nTPM: 33.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 196.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 166.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 114.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 107.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 101.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 94.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 94.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 93.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 93.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 91.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 90.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 167.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.8
FF:10158-103A5 76 years, female 167.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.8
Pig sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 165.8
Min nTPM: 31.8
Sample A Female 165.8
Sample B Female 64.2
Sample C Male 31.8
Sample D Male 37.5
Periaqueductal gray
nTPM: 45.5
Samples: 3

Max nTPM: 54.3
Min nTPM: 34.5
Sample B Female 54.3
Sample C Male 34.5
Sample D Male 47.6
Substantia nigra
nTPM: 66.9
Samples: 4

Max nTPM: 105.2
Min nTPM: 37.5
Sample A Female 75.6
Sample B Female 37.5
Sample C Male 49.3
Sample D Male 105.2
Superior colliculi
nTPM: 55.0
Samples: 4

Max nTPM: 69.9
Min nTPM: 26.5
Sample A Female 68.5
Sample B Female 26.5
Sample C Male 55.2
Sample D Male 69.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 115.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.0
Samples: 4

Max nTPM: 120.7
Min nTPM: 110.8
Sample A Male 112.3
Sample B Male 110.8
Sample C Female 120.7
Sample D Female 116.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
69447978 Antisense, RP_050419_02_D12, Mouse strain C57BL/6J (56 days, male) 9.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.