MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:132.1 nTPM
HPA:132.1 nTPM
GTEx:159.6 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Pig:87.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 132.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 116.8
2666 Male, age 74, left hemisphere 142.3
1870 Female, age 42, unknown 121.1
1833 Male, age 53, unknown 120.5
2828 Female, age 72, unknown 118.4
2586 Male, age 75, left hemisphere 118.2
1827 Male, age 72, unknown 117.7
1830 Male, age 51, unknown 112.8
2019 Male, age 18, unknown 106.4
2411 Female, age 72, unknown 105.8
2219 Male, age 76, both hemispheres 104.4
Dorsal raphe nucleus
nTPM: 114.4
2047 Male, age 72, unknown 121.1
1828 Male, age 53, unknown 116.9
2750 Male, age 76, both hemispheres 115.2
2298 Female, age 72, unknown 110.3
2016 Female, age 72, unknown 108.7
Inferior colliculus
nTPM: 111.6
2849 Male, age 72, unknown 127.6
1848 Female, age 42, unknown 112.3
1890 Male, age 53, unknown 104.2
2097 Female, age 72, unknown 102.3
Median raphe nucleus
nTPM: 132.1
2220 Male, age 76, midline 132.1
Pedunculopontine tegmental nucleus
nTPM: 123.5
2338 Male, age 61, both hemispheres 137.9
2334 Male, age 80, both hemispheres 127.0
1921 Female, age 85, both hemispheres 105.7
Periaquaductal grey, anterior
nTPM: 106.5
1795 Male, age 51, unknown 109.9
1947 Male, age 18, unknown 107.5
2502 Female, age 75, unknown 102.1
Periaquaductal grey, dorsal
nTPM: 114.9
2850 Male, age 76, both hemispheres 134.7
1831 Male, age 72, unknown 109.5
1840 Male, age 53, unknown 109.1
2464 Female, age 72, unknown 106.3
Periaquaductal grey, lateral
nTPM: 108.7
2140 Male, age 76, both hemispheres 111.7
2053 Male, age 18, unknown 108.6
2272 Male, age 74, both hemispheres 105.9
Pretectal area
nTPM: 111.9
1817 Female, age 42, unknown 120.9
1815 Male, age 53, unknown 120.5
2825 Male, age 18, unknown 120.2
1816 Male, age 51, unknown 117.1
2667 Female, age 75, unknown 114.6
2224 Female, age 72, unknown 110.9
1944 Female, age 72, unknown 110.2
2007 Male, age 72, unknown 109.9
2407 Male, age 75, both hemispheres 105.9
2273 Male, age 74, both hemispheres 101.1
2316 Male, age 76, right hemisphere 100.3
Red nucleus
nTPM: 116.1
1821 Female, age 72, unknown 123.4
2725 Female, age 75, unknown 121.8
2588 Male, age 74, left hemisphere 121.5
2823 Male, age 76, right hemisphere 118.1
2584 Male, age 75, left hemisphere 117.4
1954 Female, age 42, unknown 116.6
2503 Female, age 72, unknown 114.7
2769 Male, age 72, unknown 114.7
1865 Male, age 51, unknown 114.1
2227 Male, age 72, unknown 111.4
2785 Male, age 18, unknown 110.4
1904 Male, age 53, unknown 109.2
Substantia nigra
nTPM: 119.1
2699 Male, age 18, unknown 132.2
2665 Male, age 74, both hemispheres 130.0
1916 Female, age 42, unknown 126.5
1941 Male, age 53, unknown 124.3
1851 Male, age 51, unknown 117.5
2583 Male, age 75, right hemisphere 116.7
1889 Female, age 72, unknown 113.4
2590 Female, age 75, unknown 112.0
2241 Male, age 72, unknown 111.2
2409 Female, age 72, unknown 107.1
Superior colliculus
nTPM: 110.0
1839 Male, age 51, unknown 117.3
2587 Male, age 74, left hemisphere 114.3
2664 Male, age 75, both hemispheres 113.2
2668 Female, age 75, unknown 112.7
1796 Male, age 53, unknown 112.5
1913 Female, age 42, unknown 108.0
1895 Male, age 76, right hemisphere 107.8
1995 Male, age 72, unknown 105.9
2261 Male, age 18, unknown 105.1
2087 Female, age 72, unknown 103.4
Ventral tegmental area
nTPM: 114.2
2223 Female, age 72, unknown 122.1
1915 Female, age 42, unknown 121.9
2218 Male, age 76, both hemispheres 119.0
2021 Male, age 53, unknown 109.9
2410 Female, age 72, unknown 108.7
1942 Male, age 51, unknown 103.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.6
Samples: 139

Max nTPM: 284.4
Min nTPM: 99.9
Std nTPM: 31.6
Median nTPM: 152.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 284.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 275.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 261.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 252.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 249.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 231.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 226.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 219.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 210.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 209.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 208.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.6
FF:10158-103A5 76 years, female 101.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.1
Pig sample Sample description nTPM
Midbrain
nTPM: 86.8
Samples: 4

Max nTPM: 128.3
Min nTPM: 59.7
Sample A Female 128.3
Sample B Female 78.5
Sample C Male 80.6
Sample D Male 59.7
Periaqueductal gray
nTPM: 71.6
Samples: 3

Max nTPM: 85.5
Min nTPM: 64.6
Sample B Female 64.8
Sample C Male 85.5
Sample D Male 64.6
Substantia nigra
nTPM: 87.1
Samples: 4

Max nTPM: 110.8
Min nTPM: 70.2
Sample A Female 110.8
Sample B Female 70.2
Sample C Male 96.2
Sample D Male 71.1
Superior colliculi
nTPM: 82.2
Samples: 4

Max nTPM: 95.3
Min nTPM: 61.4
Sample A Female 95.3
Sample B Female 61.4
Sample C Male 92.0
Sample D Male 79.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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