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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:214.3 nTPM
HPA:214.3 nTPM
GTEx:111.0 nTPM
FANTOM5:138.5 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 214.3
Sample id Sample description nTPM
Amygdala
nTPM: 214.3
2695 Female, age 67, right hemisphere 233.2
2814 Male, age 76, right hemisphere 221.2
1987 Female, age 91, left hemisphere 208.0
2514 Male, age 75, right hemisphere 205.4
2517 Female, age 94, left hemisphere 203.9
Basal amygdala
nTPM: 202.6
2609 Male, age 75, right hemisphere 219.6
2110 Male, age 80, left hemisphere 204.2
1955 Male, age 76, both hemispheres 202.4
2685 Female, age 94, left hemisphere 199.6
2243 Female, age 91, right hemisphere 199.4
2827 Female, age 67, right hemisphere 190.7
Central amygdala
nTPM: 207.1
1905 Male, age 76, both hemispheres 215.1
2826 Female, age 94, left hemisphere 208.7
2515 Male, age 75, right hemisphere 208.1
2239 Male, age 80, left hemisphere 204.2
2701 Female, age 91, right hemisphere 199.3
Corticomedial amygdala
nTPM: 199.9
2428 Male, age 75, right hemisphere 213.9
2829 Male, age 80, left hemisphere 210.0
2429 Female, age 94, left hemisphere 201.1
2240 Male, age 76, both hemispheres 193.4
2242 Female, age 91, right hemisphere 191.3
2535 Female, age 67, right hemisphere 189.4
Lateral amygdala
nTPM: 200.4
2516 Male, age 75, right hemisphere 209.3
1883 Male, age 76, both hemispheres 205.7
2256 Male, age 80, left hemisphere 201.0
2255 Female, age 91, right hemisphere 199.7
2534 Female, age 94, left hemisphere 197.4
2830 Female, age 67, right hemisphere 189.4
Stria terminalis, bed nucleus
nTPM: 194.2
2486 Female, age 94, both hemispheres 194.5
1974 Female, age 91, both hemispheres 194.1
2201 Male, age 74, unknown 194.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 111.0
Samples: 152

Max nTPM: 427.7
Min nTPM: 22.2
Std nTPM: 73.1
Median nTPM: 84.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 427.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 413.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 310.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 293.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 291.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 275.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 261.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 259.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 255.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 254.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 250.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 247.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 223.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 212.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 210.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 202.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 201.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 200.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 200.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 198.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 194.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 185.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 184.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 173.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 172.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 168.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 164.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 164.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 164.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 160.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 159.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 159.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 158.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 154.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 153.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 151.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 144.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 141.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 138.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 137.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 131.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 129.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 125.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 123.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 121.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 120.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 114.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 111.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 110.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 106.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 104.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 103.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 103.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 102.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 102.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 101.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 100.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 100.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 99.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 98.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 98.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 96.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 93.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 91.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 89.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 88.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 87.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 84.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 83.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 83.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 81.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 81.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 81.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 80.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 80.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 79.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 78.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 76.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 76.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 76.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 75.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 75.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 74.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 73.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 72.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 71.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 71.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 70.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 69.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 68.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 68.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 68.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 68.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 67.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 67.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 66.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 65.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 65.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 63.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 62.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 61.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 61.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 60.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 60.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 59.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 59.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 58.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 57.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 55.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 55.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 53.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 52.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 51.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 49.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 48.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 47.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 47.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 46.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 44.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 44.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 43.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 43.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 42.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 42.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 38.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 37.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 36.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 36.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 35.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 35.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 35.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 31.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 31.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 31.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 30.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 27.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 22.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 138.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 138.5
FF:10151-102I7 76 years, female 138.5

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