MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:226.8 nTPM
HPA:226.8 nTPM
GTEx:205.4 nTPM
FANTOM5:146.4 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 226.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 216.2
2586 Male, age 75, left hemisphere 252.4
2828 Female, age 72, unknown 224.3
1827 Male, age 72, unknown 220.1
1870 Female, age 42, unknown 217.4
2411 Female, age 72, unknown 213.4
1830 Male, age 51, unknown 211.8
2666 Male, age 74, left hemisphere 211.8
1833 Male, age 53, unknown 211.7
2019 Male, age 18, unknown 203.6
2219 Male, age 76, both hemispheres 195.3
Dorsal raphe nucleus
nTPM: 224.3
2016 Female, age 72, unknown 234.0
1828 Male, age 53, unknown 232.0
2047 Male, age 72, unknown 219.9
2750 Male, age 76, both hemispheres 218.7
2298 Female, age 72, unknown 217.1
Inferior colliculus
nTPM: 219.0
1848 Female, age 42, unknown 225.8
2097 Female, age 72, unknown 221.1
2849 Male, age 72, unknown 216.9
1890 Male, age 53, unknown 212.3
Median raphe nucleus
nTPM: 218.3
2220 Male, age 76, midline 218.3
Pedunculopontine tegmental nucleus
nTPM: 216.8
2334 Male, age 80, both hemispheres 234.6
1921 Female, age 85, both hemispheres 219.7
2338 Male, age 61, both hemispheres 196.0
Periaquaductal grey, anterior
nTPM: 217.0
1795 Male, age 51, unknown 219.9
2502 Female, age 75, unknown 216.7
1947 Male, age 18, unknown 214.5
Periaquaductal grey, dorsal
nTPM: 223.0
2850 Male, age 76, both hemispheres 236.7
1840 Male, age 53, unknown 227.5
1831 Male, age 72, unknown 216.0
2464 Female, age 72, unknown 212.0
Periaquaductal grey, lateral
nTPM: 223.8
2053 Male, age 18, unknown 232.5
2140 Male, age 76, both hemispheres 231.3
2272 Male, age 74, both hemispheres 207.5
Pretectal area
nTPM: 219.9
2667 Female, age 75, unknown 232.6
2316 Male, age 76, right hemisphere 228.6
1944 Female, age 72, unknown 224.2
1816 Male, age 51, unknown 223.8
2273 Male, age 74, both hemispheres 223.4
2825 Male, age 18, unknown 223.1
2224 Female, age 72, unknown 220.8
1817 Female, age 42, unknown 219.3
1815 Male, age 53, unknown 215.1
2007 Male, age 72, unknown 208.6
2407 Male, age 75, both hemispheres 199.4
Red nucleus
nTPM: 221.8
1821 Female, age 72, unknown 245.1
2503 Female, age 72, unknown 229.2
2227 Male, age 72, unknown 228.7
2725 Female, age 75, unknown 228.7
2769 Male, age 72, unknown 228.4
2823 Male, age 76, right hemisphere 226.7
1954 Female, age 42, unknown 225.8
2588 Male, age 74, left hemisphere 217.3
1865 Male, age 51, unknown 216.0
1904 Male, age 53, unknown 208.5
2584 Male, age 75, left hemisphere 204.9
2785 Male, age 18, unknown 201.9
Substantia nigra
nTPM: 226.8
2699 Male, age 18, unknown 258.7
1916 Female, age 42, unknown 245.6
1851 Male, age 51, unknown 240.6
2409 Female, age 72, unknown 227.6
1889 Female, age 72, unknown 224.7
2241 Male, age 72, unknown 220.2
2590 Female, age 75, unknown 216.0
2665 Male, age 74, both hemispheres 214.1
2583 Male, age 75, right hemisphere 210.9
1941 Male, age 53, unknown 209.7
Superior colliculus
nTPM: 220.6
1796 Male, age 53, unknown 236.5
2087 Female, age 72, unknown 226.5
1995 Male, age 72, unknown 226.4
2261 Male, age 18, unknown 223.8
1839 Male, age 51, unknown 222.1
2587 Male, age 74, left hemisphere 219.8
1913 Female, age 42, unknown 216.8
1895 Male, age 76, right hemisphere 215.5
2668 Female, age 75, unknown 210.0
2664 Male, age 75, both hemispheres 208.6
Ventral tegmental area
nTPM: 222.3
2021 Male, age 53, unknown 241.6
2410 Female, age 72, unknown 233.4
1915 Female, age 42, unknown 227.2
2218 Male, age 76, both hemispheres 220.8
1942 Male, age 51, unknown 206.9
2223 Female, age 72, unknown 203.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 205.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 205.4
Samples: 139

Max nTPM: 855.3
Min nTPM: 18.7
Std nTPM: 155.6
Median nTPM: 158.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 855.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 726.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 599.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 598.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 586.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 574.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 542.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 538.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 507.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 477.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 459.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 146.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.4
FF:10158-103A5 76 years, female 146.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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