MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.2 nTPM
HPA:64.2 nTPM
GTEx:102.2 nTPM
FANTOM5:92.2 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:153.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.5
2019 Male, age 18, unknown 65.2
2411 Female, age 72, unknown 64.2
1870 Female, age 42, unknown 63.8
2828 Female, age 72, unknown 63.2
1833 Male, age 53, unknown 63.1
1827 Male, age 72, unknown 62.0
2666 Male, age 74, left hemisphere 61.9
1830 Male, age 51, unknown 61.7
2586 Male, age 75, left hemisphere 61.4
2219 Male, age 76, both hemispheres 59.1
Dorsal raphe nucleus
nTPM: 63.2
2298 Female, age 72, unknown 65.1
2750 Male, age 76, both hemispheres 64.2
2016 Female, age 72, unknown 62.7
1828 Male, age 53, unknown 62.3
2047 Male, age 72, unknown 61.8
Inferior colliculus
nTPM: 61.1
2097 Female, age 72, unknown 62.1
1890 Male, age 53, unknown 62.0
1848 Female, age 42, unknown 61.2
2849 Male, age 72, unknown 59.3
Median raphe nucleus
nTPM: 61.9
2220 Male, age 76, midline 61.9
Pedunculopontine tegmental nucleus
nTPM: 62.9
2338 Male, age 61, both hemispheres 63.8
2334 Male, age 80, both hemispheres 63.2
1921 Female, age 85, both hemispheres 61.8
Periaquaductal grey, anterior
nTPM: 62.1
2502 Female, age 75, unknown 63.1
1795 Male, age 51, unknown 62.3
1947 Male, age 18, unknown 61.1
Periaquaductal grey, dorsal
nTPM: 61.0
1831 Male, age 72, unknown 62.0
2464 Female, age 72, unknown 61.4
2850 Male, age 76, both hemispheres 60.8
1840 Male, age 53, unknown 60.0
Periaquaductal grey, lateral
nTPM: 62.4
2053 Male, age 18, unknown 63.2
2272 Male, age 74, both hemispheres 62.5
2140 Male, age 76, both hemispheres 61.4
Pretectal area
nTPM: 63.3
2007 Male, age 72, unknown 64.8
1816 Male, age 51, unknown 64.4
2667 Female, age 75, unknown 64.1
2273 Male, age 74, both hemispheres 63.9
1815 Male, age 53, unknown 63.8
1817 Female, age 42, unknown 63.5
2316 Male, age 76, right hemisphere 63.5
2224 Female, age 72, unknown 62.5
1944 Female, age 72, unknown 62.2
2825 Male, age 18, unknown 61.9
2407 Male, age 75, both hemispheres 61.6
Red nucleus
nTPM: 64.2
1821 Female, age 72, unknown 67.3
1904 Male, age 53, unknown 65.9
1865 Male, age 51, unknown 65.4
2503 Female, age 72, unknown 65.3
2227 Male, age 72, unknown 65.0
2588 Male, age 74, left hemisphere 64.3
2823 Male, age 76, right hemisphere 64.2
2769 Male, age 72, unknown 63.7
2785 Male, age 18, unknown 63.2
1954 Female, age 42, unknown 62.8
2725 Female, age 75, unknown 61.9
2584 Male, age 75, left hemisphere 61.5
Substantia nigra
nTPM: 62.9
1851 Male, age 51, unknown 66.5
1916 Female, age 42, unknown 65.2
2699 Male, age 18, unknown 63.4
2590 Female, age 75, unknown 63.0
1889 Female, age 72, unknown 62.9
1941 Male, age 53, unknown 62.2
2241 Male, age 72, unknown 62.1
2409 Female, age 72, unknown 61.7
2665 Male, age 74, both hemispheres 61.5
2583 Male, age 75, right hemisphere 60.6
Superior colliculus
nTPM: 63.1
2587 Male, age 74, left hemisphere 65.2
1995 Male, age 72, unknown 65.1
1913 Female, age 42, unknown 64.6
2668 Female, age 75, unknown 63.3
2664 Male, age 75, both hemispheres 62.8
2261 Male, age 18, unknown 62.4
1796 Male, age 53, unknown 62.3
1895 Male, age 76, right hemisphere 62.1
2087 Female, age 72, unknown 61.9
1839 Male, age 51, unknown 61.3
Ventral tegmental area
nTPM: 63.7
2410 Female, age 72, unknown 66.0
2223 Female, age 72, unknown 65.1
1915 Female, age 42, unknown 63.9
2021 Male, age 53, unknown 63.3
2218 Male, age 76, both hemispheres 62.9
1942 Male, age 51, unknown 60.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.2
Samples: 139

Max nTPM: 304.4
Min nTPM: 36.5
Std nTPM: 37.0
Median nTPM: 94.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 304.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 248.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 204.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 194.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 193.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 180.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 174.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 169.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 159.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 158.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 158.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.2
FF:10158-103A5 76 years, female 92.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.2
Pig sample Sample description nTPM
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 26.9
Min nTPM: 14.9
Sample A Female 26.9
Sample B Female 24.6
Sample C Male 20.1
Sample D Male 14.9
Periaqueductal gray
nTPM: 18.0
Samples: 3

Max nTPM: 19.3
Min nTPM: 16.8
Sample B Female 17.8
Sample C Male 16.8
Sample D Male 19.3
Substantia nigra
nTPM: 23.2
Samples: 4

Max nTPM: 24.7
Min nTPM: 20.3
Sample A Female 24.5
Sample B Female 24.7
Sample C Male 23.4
Sample D Male 20.3
Superior colliculi
nTPM: 23.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 20.9
Sample A Female 27.2
Sample B Female 21.6
Sample C Male 22.6
Sample D Male 20.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 153.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.1
Samples: 4

Max nTPM: 170.4
Min nTPM: 132.9
Sample A Male 168.0
Sample B Male 141.0
Sample C Female 132.9
Sample D Female 170.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69407110 Antisense, RP_050412_02_H08, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.