BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:15.5 nTPM
HPA:15.5 nTPM
GTEx:14.7 nTPM
FANTOM5:0.7 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:0.4 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA079265
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.2
2289 Male, age 61, right hemisphere 18.5
1854 Male, age 80, left hemisphere 16.0
2288 Male, age 75, left hemisphere 15.6
2290 Female, age 72, unknown 15.3
1857 Female, age 85, left hemisphere 14.5
2846 Female, age 79, unknown 14.2
1781 Male, age 74, unknown 14.1
2481 Female, age 94, left hemisphere 13.2
Claustrum
nTPM: 15.3
2568 Male, age 61, both hemispheres 17.4
2645 Female, age 72, unknown 16.6
2292 Female, age 85, both hemispheres 15.8
2284 Female, age 91, both hemispheres 15.2
2491 Male, age 75, both hemispheres 15.0
2392 Female, age 94, both hemispheres 14.6
2196 Female, age 79, unknown 14.5
2198 Male, age 80, both hemispheres 14.2
1956 Male, age 74, unknown 13.9
Globus pallidus, externus
nTPM: 15.1
2567 Female, age 72, unknown 18.1
2646 Male, age 61, right hemisphere 15.9
2395 Male, age 75, both hemispheres 14.5
2772 Female, age 79, unknown 13.7
1996 Male, age 80, right hemisphere 13.3
Globus pallidus, internus
nTPM: 14.6
2111 Female, age 85, right hemisphere 16.9
2566 Female, age 72, unknown 16.7
1818 Male, age 74, unknown 15.1
2037 Male, age 80, right hemisphere 14.9
2778 Female, age 91, both hemispheres 14.8
2483 Female, age 94, right hemisphere 12.2
2287 Male, age 75, right hemisphere 11.7
Nucleus accumbens
nTPM: 14.7
2824 Male, age 61, right hemisphere 17.9
2732 Male, age 80, right hemisphere 15.8
2286 Male, age 75, left hemisphere 14.6
1783 Male, age 74, unknown 14.4
2391 Female, age 94, left hemisphere 14.1
1806 Female, age 85, left hemisphere 13.8
2698 Female, age 72, unknown 13.6
1856 Female, age 91, right hemisphere 13.4
Nucleus basalis of Meynert
nTPM: 15.5
2569 Male, age 61, both hemispheres 16.4
2484 Female, age 94, left hemisphere 16.0
2393 Male, age 80, right hemisphere 15.7
2821 Male, age 75, both hemispheres 13.9
Nucleus of the diagonal band
nTPM: 13.3
1979 Male, age 74, unknown 14.8
2029 Male, age 61, right hemisphere 14.0
2195 Female, age 85, both hemispheres 12.7
2775 Male, age 80, right hemisphere 12.6
1812 Female, age 91, both hemispheres 12.3
Olfactory tubercle
nTPM: 13.1
2856 Male, age 75, right hemisphere 13.6
1998 Female, age 91, both hemispheres 13.3
2487 Female, age 94, left hemisphere 13.1
1846 Male, age 80, right hemisphere 12.4
Putamen
nTPM: 15.0
2489 Female, age 72, unknown 15.8
1838 Male, age 80, right hemisphere 15.7
2466 Female, age 79, unknown 15.5
2647 Male, age 75, left hemisphere 15.5
1829 Male, age 74, unknown 14.7
1937 Female, age 91, right hemisphere 14.3
2482 Female, age 94, left hemisphere 13.3
Septal nuclei
nTPM: 13.5
2394 Male, age 61, left hemisphere 15.1
2059 Female, age 85, both hemispheres 14.8
2009 Female, age 91, both hemispheres 14.0
2199 Male, age 80, right hemisphere 14.0
2629 Female, age 94, right hemisphere 12.5
2031 Female, age 72, unknown 12.3
1960 Male, age 74, unknown 11.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.3
Samples: 246

Max nTPM: 30.4
Min nTPM: 2.2
Std nTPM: 4.7
Median nTPM: 13.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 30.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 28.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 28.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 25.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 24.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 22.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 22.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 22.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 22.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 21.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 21.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.7
Samples: 246

Max nTPM: 37.3
Min nTPM: 3.1
Std nTPM: 5.8
Median nTPM: 13.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 37.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 34.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 32.8
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 29.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 28.0
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 27.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 27.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 26.8
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 26.4
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 26.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 25.2
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Brain - Putamen (basal ganglia)
Average nTPM: 12.3
Samples: 205

Max nTPM: 26.7
Min nTPM: 2.9
Std nTPM: 4.4
Median nTPM: 11.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 26.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 24.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 24.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 24.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 21.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 21.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 21.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 21.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 20.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 20.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 20.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.7
FF:10164-103B2 76 years, female 0.7
Globus pallidus
Scaled Tags Per Million: 0.6
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.5
Nucleus accumbens
Scaled Tags Per Million: 0.3
FF:10037-101F1 23-56 years, mixed 0.3
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.2
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 4.6
Sample C Male 4.7
Sample D Male 4.3
Putamen
nTPM: 5.0
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.2
Sample A Female 5.3
Sample B Female 4.2
Sample C Male 4.9
Sample D Male 5.5
Septum
nTPM: 4.1
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.7
Sample A Female 4.3
Sample B Female 3.9
Sample C Male 4.6
Sample D Male 3.7
Ventral pallidum
nTPM: 4.6
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 4.8
Sample C Male 5.5
Sample D Male 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.4
Sample B Male 0.0
Sample C Female 0.1
Sample D Female 0.2
Septum
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.4
Sample A Male 0.5
Sample B Male 0.4
Sample C Female 0.4
Sample D Female 0.4
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.4
Sample B Male 0.3
Sample C Female 0.1
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68443357 Antisense, RP_050111_01_H01, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.4
68443357 Antisense, RP_050111_01_H01, Mouse strain C57BL/6J (56 days, male) 0.4

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