BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.2 nTPM
HPA:43.2 nTPM
GTEx:47.0 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:27.6 nTPM
Mouse:101.7 nTPM
Allen mouse:2.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041559Antibody HPA043530
Glial cells LowNot detected
Neuronal cells MediumNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.1
1854 Male, age 80, left hemisphere 42.9
1857 Female, age 85, left hemisphere 42.1
2288 Male, age 75, left hemisphere 41.0
2290 Female, age 72, unknown 39.5
2846 Female, age 79, unknown 39.3
1781 Male, age 74, unknown 38.9
2481 Female, age 94, left hemisphere 38.8
2289 Male, age 61, right hemisphere 38.3
Claustrum
nTPM: 41.9
2568 Male, age 61, both hemispheres 43.9
2198 Male, age 80, both hemispheres 43.5
2491 Male, age 75, both hemispheres 42.1
1956 Male, age 74, unknown 41.9
2392 Female, age 94, both hemispheres 41.9
2284 Female, age 91, both hemispheres 41.5
2196 Female, age 79, unknown 41.1
2292 Female, age 85, both hemispheres 40.6
2645 Female, age 72, unknown 40.6
Globus pallidus, externus
nTPM: 37.1
2772 Female, age 79, unknown 39.5
2395 Male, age 75, both hemispheres 37.3
2646 Male, age 61, right hemisphere 36.9
2567 Female, age 72, unknown 36.3
1996 Male, age 80, right hemisphere 35.5
Globus pallidus, internus
nTPM: 37.8
2287 Male, age 75, right hemisphere 41.0
2778 Female, age 91, both hemispheres 39.5
2483 Female, age 94, right hemisphere 38.6
1818 Male, age 74, unknown 37.4
2566 Female, age 72, unknown 36.3
2037 Male, age 80, right hemisphere 36.2
2111 Female, age 85, right hemisphere 35.6
Nucleus accumbens
nTPM: 41.6
1856 Female, age 91, right hemisphere 47.2
2391 Female, age 94, left hemisphere 42.6
1806 Female, age 85, left hemisphere 42.3
1783 Male, age 74, unknown 41.5
2824 Male, age 61, right hemisphere 41.5
2286 Male, age 75, left hemisphere 39.6
2698 Female, age 72, unknown 39.2
2732 Male, age 80, right hemisphere 38.8
Nucleus basalis of Meynert
nTPM: 37.7
2393 Male, age 80, right hemisphere 38.7
2484 Female, age 94, left hemisphere 38.5
2821 Male, age 75, both hemispheres 37.8
2569 Male, age 61, both hemispheres 35.7
Nucleus of the diagonal band
nTPM: 43.2
2775 Male, age 80, right hemisphere 47.1
1812 Female, age 91, both hemispheres 43.2
2029 Male, age 61, right hemisphere 42.5
2195 Female, age 85, both hemispheres 42.5
1979 Male, age 74, unknown 40.6
Olfactory tubercle
nTPM: 43.0
1998 Female, age 91, both hemispheres 45.1
1846 Male, age 80, right hemisphere 44.7
2487 Female, age 94, left hemisphere 42.4
2856 Male, age 75, right hemisphere 39.9
Putamen
nTPM: 39.7
1838 Male, age 80, right hemisphere 44.2
1937 Female, age 91, right hemisphere 41.4
2482 Female, age 94, left hemisphere 40.7
2466 Female, age 79, unknown 40.4
1829 Male, age 74, unknown 38.1
2647 Male, age 75, left hemisphere 37.8
2489 Female, age 72, unknown 35.1
Septal nuclei
nTPM: 39.9
2031 Female, age 72, unknown 45.0
1960 Male, age 74, unknown 41.9
2009 Female, age 91, both hemispheres 41.0
2059 Female, age 85, both hemispheres 38.9
2199 Male, age 80, right hemisphere 37.8
2629 Female, age 94, right hemisphere 37.8
2394 Male, age 61, left hemisphere 36.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.9
Samples: 246

Max nTPM: 83.6
Min nTPM: 18.9
Std nTPM: 11.3
Median nTPM: 36.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 83.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 75.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 68.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 67.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 64.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 64.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 63.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 63.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 62.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 60.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 60.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.0
Samples: 246

Max nTPM: 92.0
Min nTPM: 21.7
Std nTPM: 13.1
Median nTPM: 47.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 92.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 79.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 77.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 76.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 75.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 75.1
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 73.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 72.8
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 69.7
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 69.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 69.1
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Brain - Putamen (basal ganglia)
Average nTPM: 37.3
Samples: 205

Max nTPM: 64.2
Min nTPM: 20.1
Std nTPM: 10.2
Median nTPM: 36.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 64.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 64.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 61.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 60.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 60.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 59.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 58.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 57.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 57.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 56.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 56.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.3
FF:10164-103B2 76 years, female 58.3
Globus pallidus
Scaled Tags Per Million: 36.4
FF:10161-103A8 76 years, female 36.4
FF:10175-103C4 60 years, female 36.3
Nucleus accumbens
Scaled Tags Per Million: 64.1
FF:10037-101F1 23-56 years, mixed 64.1
Putamen
Scaled Tags Per Million: 67.9
FF:10176-103C5 60 years, female 67.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.6
Pig sample Sample description nTPM
Caudate
nTPM: 25.2
Samples: 4

Max nTPM: 29.3
Min nTPM: 20.1
Sample A Female 20.1
Sample B Female 26.9
Sample C Male 29.3
Sample D Male 24.4
Putamen
nTPM: 27.6
Samples: 4

Max nTPM: 34.0
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 24.6
Sample C Male 34.0
Sample D Male 28.8
Septum
nTPM: 23.8
Samples: 4

Max nTPM: 25.1
Min nTPM: 22.5
Sample A Female 23.8
Sample B Female 22.5
Sample C Male 25.1
Sample D Male 23.7
Ventral pallidum
nTPM: 24.2
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.9
Sample A Female 22.5
Sample B Female 27.3
Sample C Male 24.9
Sample D Male 21.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 94.8
Samples: 4

Max nTPM: 99.7
Min nTPM: 90.1
Sample A Male 95.8
Sample B Male 90.1
Sample C Female 93.4
Sample D Female 99.7
Septum
nTPM: 98.1
Samples: 4

Max nTPM: 105.4
Min nTPM: 87.5
Sample A Male 99.6
Sample B Male 105.4
Sample C Female 99.7
Sample D Female 87.5
Ventral forebrain
nTPM: 101.7
Samples: 4

Max nTPM: 118.6
Min nTPM: 93.9
Sample A Male 96.6
Sample B Male 93.9
Sample C Female 118.6
Sample D Female 97.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
68077015 Antisense, RP_040929_01_C08, Mouse strain C57BL/6J (56 days, male) 2.2
Pallidum
Expression energy: 1.6
68077015 Antisense, RP_040929_01_C08, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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