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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.4 nTPM
HPA:46.4 nTPM
GTEx:57.7 nTPM
FANTOM5:87.6 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:13.5 nTPM
Allen mouse:15.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 46.4
Sample id Sample description nTPM
Amygdala
nTPM: 46.4
2514 Male, age 75, right hemisphere 55.8
2814 Male, age 76, right hemisphere 55.5
2517 Female, age 94, left hemisphere 42.1
2695 Female, age 67, right hemisphere 40.3
1987 Female, age 91, left hemisphere 38.4
Basal amygdala
nTPM: 42.0
2609 Male, age 75, right hemisphere 49.3
2827 Female, age 67, right hemisphere 48.2
2110 Male, age 80, left hemisphere 40.5
1955 Male, age 76, both hemispheres 40.0
2685 Female, age 94, left hemisphere 37.8
2243 Female, age 91, right hemisphere 35.9
Central amygdala
nTPM: 41.1
1905 Male, age 76, both hemispheres 49.3
2515 Male, age 75, right hemisphere 43.1
2239 Male, age 80, left hemisphere 40.2
2701 Female, age 91, right hemisphere 39.0
2826 Female, age 94, left hemisphere 33.9
Corticomedial amygdala
nTPM: 39.5
2428 Male, age 75, right hemisphere 48.0
2535 Female, age 67, right hemisphere 43.5
2429 Female, age 94, left hemisphere 43.2
2829 Male, age 80, left hemisphere 36.8
2242 Female, age 91, right hemisphere 33.1
2240 Male, age 76, both hemispheres 32.2
Lateral amygdala
nTPM: 45.6
2516 Male, age 75, right hemisphere 54.8
2830 Female, age 67, right hemisphere 46.1
1883 Male, age 76, both hemispheres 46.0
2256 Male, age 80, left hemisphere 43.5
2255 Female, age 91, right hemisphere 43.3
2534 Female, age 94, left hemisphere 39.6
Stria terminalis, bed nucleus
nTPM: 36.7
1974 Female, age 91, both hemispheres 38.7
2486 Female, age 94, both hemispheres 35.9
2201 Male, age 74, unknown 35.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 57.7
Samples: 152

Max nTPM: 122.0
Min nTPM: 7.1
Std nTPM: 24.5
Median nTPM: 53.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 122.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 121.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 119.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 114.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 109.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 102.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 101.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 97.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 97.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 95.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 94.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 94.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 94.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 94.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 94.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 93.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 92.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 91.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 87.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 86.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 86.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 85.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 84.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 84.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 81.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 81.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 80.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 79.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 78.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 78.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 78.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 76.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 74.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 74.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 74.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 73.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 73.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 73.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 73.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 73.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 72.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 71.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 71.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 70.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 68.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 67.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 67.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 66.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 66.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 65.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 64.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 61.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 61.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 60.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 60.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 60.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 60.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 60.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 59.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 58.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 58.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 57.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 56.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 56.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 55.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 55.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 55.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 54.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 54.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 52.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 52.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 51.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 50.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 50.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 49.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 49.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 48.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 48.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 47.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 46.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 46.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 46.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 45.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 45.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 45.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 43.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 43.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 43.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 43.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 43.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 42.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 42.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 42.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 42.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 41.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 41.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 40.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 40.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 39.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 39.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 39.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 38.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 38.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 38.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 38.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 38.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 38.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 37.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 37.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 37.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 36.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 35.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 35.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 34.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 34.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 34.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 34.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 33.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 33.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 31.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 31.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 29.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 29.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 29.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 28.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 28.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 28.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 28.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 28.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 28.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 27.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 27.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 25.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 25.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 24.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 21.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 19.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 15.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 10.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 87.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 87.6
FF:10151-102I7 76 years, female 87.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.4
Pig sample Sample description nTPM
Amygdala
nTPM: 25.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 20.5
Sample A Female 28.5
Sample B Female 27.4
Sample C Male 25.0
Sample D Male 20.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 13.5
Samples: 4

Max nTPM: 16.8
Min nTPM: 11.2
Sample A Male 12.2
Sample B Male 11.2
Sample C Female 16.8
Sample D Female 13.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.8
2449 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 15.8
2448 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 10.3

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