BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:58.3 nTPM
HPA:58.3 nTPM
GTEx:44.5 nTPM
FANTOM5:129.1 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:19.8 nTPM
Allen mouse:14.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003254Antibody CAB019381
Glial cells LowHigh
Neuronal cells Not detectedNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.0
2288 Male, age 75, left hemisphere 56.5
2481 Female, age 94, left hemisphere 42.8
1781 Male, age 74, unknown 40.1
2290 Female, age 72, unknown 38.7
2289 Male, age 61, right hemisphere 37.3
2846 Female, age 79, unknown 36.4
1854 Male, age 80, left hemisphere 35.2
1857 Female, age 85, left hemisphere 32.6
Claustrum
nTPM: 43.3
2292 Female, age 85, both hemispheres 67.0
1956 Male, age 74, unknown 53.2
2491 Male, age 75, both hemispheres 43.8
2196 Female, age 79, unknown 41.8
2198 Male, age 80, both hemispheres 40.2
2392 Female, age 94, both hemispheres 37.4
2284 Female, age 91, both hemispheres 37.2
2568 Male, age 61, both hemispheres 35.9
2645 Female, age 72, unknown 33.6
Globus pallidus, externus
nTPM: 56.5
1996 Male, age 80, right hemisphere 67.6
2772 Female, age 79, unknown 61.8
2646 Male, age 61, right hemisphere 53.8
2567 Female, age 72, unknown 53.3
2395 Male, age 75, both hemispheres 46.0
Globus pallidus, internus
nTPM: 58.3
2111 Female, age 85, right hemisphere 72.9
2778 Female, age 91, both hemispheres 66.6
2287 Male, age 75, right hemisphere 58.2
2566 Female, age 72, unknown 57.4
1818 Male, age 74, unknown 56.6
2037 Male, age 80, right hemisphere 55.6
2483 Female, age 94, right hemisphere 40.9
Nucleus accumbens
nTPM: 43.4
2286 Male, age 75, left hemisphere 56.5
2732 Male, age 80, right hemisphere 48.5
2391 Female, age 94, left hemisphere 46.6
2698 Female, age 72, unknown 46.0
1806 Female, age 85, left hemisphere 41.7
1783 Male, age 74, unknown 38.8
2824 Male, age 61, right hemisphere 37.4
1856 Female, age 91, right hemisphere 31.4
Nucleus basalis of Meynert
nTPM: 40.7
2569 Male, age 61, both hemispheres 50.6
2484 Female, age 94, left hemisphere 40.0
2821 Male, age 75, both hemispheres 39.5
2393 Male, age 80, right hemisphere 32.8
Nucleus of the diagonal band
nTPM: 32.3
1979 Male, age 74, unknown 36.0
1812 Female, age 91, both hemispheres 32.3
2029 Male, age 61, right hemisphere 31.5
2195 Female, age 85, both hemispheres 30.9
2775 Male, age 80, right hemisphere 30.9
Olfactory tubercle
nTPM: 35.5
2487 Female, age 94, left hemisphere 38.3
2856 Male, age 75, right hemisphere 37.2
1998 Female, age 91, both hemispheres 34.1
1846 Male, age 80, right hemisphere 32.2
Putamen
nTPM: 37.4
2482 Female, age 94, left hemisphere 45.4
1829 Male, age 74, unknown 41.2
2489 Female, age 72, unknown 38.2
1937 Female, age 91, right hemisphere 37.3
2466 Female, age 79, unknown 35.4
2647 Male, age 75, left hemisphere 34.8
1838 Male, age 80, right hemisphere 29.2
Septal nuclei
nTPM: 38.3
2394 Male, age 61, left hemisphere 50.5
2199 Male, age 80, right hemisphere 41.6
2059 Female, age 85, both hemispheres 40.6
2629 Female, age 94, right hemisphere 36.1
1960 Male, age 74, unknown 33.4
2009 Female, age 91, both hemispheres 33.0
2031 Female, age 72, unknown 32.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.7
Samples: 246

Max nTPM: 122.5
Min nTPM: 9.7
Std nTPM: 16.9
Median nTPM: 32.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 122.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 108.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 92.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 87.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 73.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 73.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 71.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 70.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 69.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 68.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 66.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.6
Samples: 246

Max nTPM: 94.7
Min nTPM: 5.0
Std nTPM: 14.7
Median nTPM: 25.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 94.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 94.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 87.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 67.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 65.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 65.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 65.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 65.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 63.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 62.5
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 62.3
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Brain - Putamen (basal ganglia)
Average nTPM: 44.5
Samples: 205

Max nTPM: 108.6
Min nTPM: 10.4
Std nTPM: 17.4
Median nTPM: 41.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 108.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 100.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 94.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 94.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 87.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 87.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 87.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 86.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 85.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 83.9
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 83.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 53.0
FF:10164-103B2 76 years, female 53.0
Globus pallidus
Scaled Tags Per Million: 129.1
FF:10175-103C4 60 years, female 187.8
FF:10161-103A8 76 years, female 70.4
Nucleus accumbens
Scaled Tags Per Million: 102.9
FF:10037-101F1 23-56 years, mixed 102.9
Putamen
Scaled Tags Per Million: 37.1
FF:10176-103C5 60 years, female 37.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Caudate
nTPM: 18.9
Samples: 4

Max nTPM: 21.0
Min nTPM: 15.7
Sample A Female 19.0
Sample B Female 21.0
Sample C Male 19.9
Sample D Male 15.7
Putamen
nTPM: 34.4
Samples: 4

Max nTPM: 56.1
Min nTPM: 20.0
Sample A Female 56.1
Sample B Female 20.0
Sample C Male 28.6
Sample D Male 32.7
Septum
nTPM: 26.6
Samples: 4

Max nTPM: 30.8
Min nTPM: 20.7
Sample A Female 30.8
Sample B Female 20.7
Sample C Male 27.3
Sample D Male 27.4
Ventral pallidum
nTPM: 30.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 19.5
Sample A Female 19.5
Sample B Female 27.3
Sample C Male 42.4
Sample D Male 32.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 16.3
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.3
Sample A Male 16.0
Sample B Male 16.1
Sample C Female 17.9
Sample D Female 15.3
Septum
nTPM: 19.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 15.0
Sample A Male 15.0
Sample B Male 15.7
Sample C Female 21.8
Sample D Female 26.7
Ventral forebrain
nTPM: 13.9
Samples: 4

Max nTPM: 15.1
Min nTPM: 13.2
Sample A Male 13.4
Sample B Male 13.2
Sample C Female 13.8
Sample D Female 15.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.2
2449 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 14.2
2448 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 8.2
Pallidum
Expression energy: 13.7
2449 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 13.7
2448 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 10.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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