MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.5 nTPM
HPA:84.5 nTPM
GTEx:96.0 nTPM
FANTOM5:6.8 Scaled Tags Per Million
Pig:60.1 nTPM
Mouse:74.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.1
2586 Male, age 75, left hemisphere 91.0
2666 Male, age 74, left hemisphere 90.4
1827 Male, age 72, unknown 86.0
2828 Female, age 72, unknown 81.4
2019 Male, age 18, unknown 78.5
2411 Female, age 72, unknown 77.1
2219 Male, age 76, both hemispheres 75.6
1833 Male, age 53, unknown 74.6
1830 Male, age 51, unknown 73.8
1870 Female, age 42, unknown 72.5
Dorsal raphe nucleus
nTPM: 73.5
2047 Male, age 72, unknown 78.1
2750 Male, age 76, both hemispheres 75.6
1828 Male, age 53, unknown 73.9
2298 Female, age 72, unknown 73.1
2016 Female, age 72, unknown 67.0
Inferior colliculus
nTPM: 77.7
2097 Female, age 72, unknown 81.2
2849 Male, age 72, unknown 79.0
1848 Female, age 42, unknown 76.1
1890 Male, age 53, unknown 74.4
Median raphe nucleus
nTPM: 81.1
2220 Male, age 76, midline 81.1
Pedunculopontine tegmental nucleus
nTPM: 72.0
1921 Female, age 85, both hemispheres 78.5
2334 Male, age 80, both hemispheres 73.2
2338 Male, age 61, both hemispheres 64.3
Periaquaductal grey, anterior
nTPM: 84.5
2502 Female, age 75, unknown 88.2
1795 Male, age 51, unknown 83.8
1947 Male, age 18, unknown 81.5
Periaquaductal grey, dorsal
nTPM: 72.9
1840 Male, age 53, unknown 76.7
2850 Male, age 76, both hemispheres 72.4
2464 Female, age 72, unknown 72.2
1831 Male, age 72, unknown 70.5
Periaquaductal grey, lateral
nTPM: 70.5
2053 Male, age 18, unknown 73.8
2140 Male, age 76, both hemispheres 72.1
2272 Male, age 74, both hemispheres 65.4
Pretectal area
nTPM: 79.7
1816 Male, age 51, unknown 91.5
1944 Female, age 72, unknown 89.4
2007 Male, age 72, unknown 89.4
1817 Female, age 42, unknown 88.9
1815 Male, age 53, unknown 80.8
2407 Male, age 75, both hemispheres 77.5
2667 Female, age 75, unknown 75.7
2825 Male, age 18, unknown 75.1
2224 Female, age 72, unknown 73.9
2316 Male, age 76, right hemisphere 72.5
2273 Male, age 74, both hemispheres 61.5
Red nucleus
nTPM: 72.3
2584 Male, age 75, left hemisphere 83.2
2785 Male, age 18, unknown 76.8
2588 Male, age 74, left hemisphere 74.9
2503 Female, age 72, unknown 72.8
2769 Male, age 72, unknown 72.7
1821 Female, age 72, unknown 71.7
1954 Female, age 42, unknown 71.1
2227 Male, age 72, unknown 71.0
2823 Male, age 76, right hemisphere 70.6
2725 Female, age 75, unknown 68.7
1865 Male, age 51, unknown 68.0
1904 Male, age 53, unknown 66.5
Substantia nigra
nTPM: 79.3
1916 Female, age 42, unknown 89.1
1941 Male, age 53, unknown 88.7
2665 Male, age 74, both hemispheres 87.2
1889 Female, age 72, unknown 82.2
1851 Male, age 51, unknown 79.3
2583 Male, age 75, right hemisphere 78.4
2590 Female, age 75, unknown 74.4
2699 Male, age 18, unknown 73.5
2241 Male, age 72, unknown 71.6
2409 Female, age 72, unknown 68.5
Superior colliculus
nTPM: 78.3
2087 Female, age 72, unknown 87.2
2668 Female, age 75, unknown 86.9
1796 Male, age 53, unknown 85.5
2664 Male, age 75, both hemispheres 85.2
2261 Male, age 18, unknown 82.5
1839 Male, age 51, unknown 77.6
1895 Male, age 76, right hemisphere 76.6
1995 Male, age 72, unknown 68.3
2587 Male, age 74, left hemisphere 67.3
1913 Female, age 42, unknown 65.9
Ventral tegmental area
nTPM: 77.7
2410 Female, age 72, unknown 82.8
2218 Male, age 76, both hemispheres 82.6
1915 Female, age 42, unknown 80.8
1942 Male, age 51, unknown 77.5
2223 Female, age 72, unknown 71.9
2021 Male, age 53, unknown 70.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.0
Samples: 139

Max nTPM: 198.3
Min nTPM: 64.8
Std nTPM: 20.2
Median nTPM: 92.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 198.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 142.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 139.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 137.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 137.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 133.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 131.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 129.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 127.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 127.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 125.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.8
FF:10158-103A5 76 years, female 6.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.1
Pig sample Sample description nTPM
Midbrain
nTPM: 59.6
Samples: 4

Max nTPM: 63.7
Min nTPM: 51.7
Sample A Female 61.6
Sample B Female 51.7
Sample C Male 61.4
Sample D Male 63.7
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 56.6
Min nTPM: 43.5
Sample B Female 48.9
Sample C Male 56.6
Sample D Male 43.5
Substantia nigra
nTPM: 54.1
Samples: 4

Max nTPM: 62.2
Min nTPM: 45.1
Sample A Female 61.6
Sample B Female 47.5
Sample C Male 62.2
Sample D Male 45.1
Superior colliculi
nTPM: 60.1
Samples: 4

Max nTPM: 65.9
Min nTPM: 55.8
Sample A Female 65.9
Sample B Female 55.8
Sample C Male 61.1
Sample D Male 57.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.4
Samples: 4

Max nTPM: 79.6
Min nTPM: 69.7
Sample A Male 79.6
Sample B Male 70.9
Sample C Female 69.7
Sample D Female 77.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68076539 Antisense, RP_040923_02_E12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.