MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:169.4 nTPM
HPA:169.4 nTPM
GTEx:983.5 nTPM
FANTOM5:0.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 169.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.8
2219 Male, age 76, both hemispheres 316.2
2828 Female, age 72, unknown 86.2
2666 Male, age 74, left hemisphere 72.5
1830 Male, age 51, unknown 71.0
2411 Female, age 72, unknown 64.5
1833 Male, age 53, unknown 64.0
2019 Male, age 18, unknown 52.3
1870 Female, age 42, unknown 44.1
2586 Male, age 75, left hemisphere 35.2
1827 Male, age 72, unknown 32.4
Dorsal raphe nucleus
nTPM: 78.3
2298 Female, age 72, unknown 246.0
1828 Male, age 53, unknown 52.2
2016 Female, age 72, unknown 41.5
2750 Male, age 76, both hemispheres 31.6
2047 Male, age 72, unknown 20.4
Inferior colliculus
nTPM: 43.1
1890 Male, age 53, unknown 60.9
1848 Female, age 42, unknown 48.4
2849 Male, age 72, unknown 37.1
2097 Female, age 72, unknown 25.9
Median raphe nucleus
nTPM: 50.9
2220 Male, age 76, midline 50.9
Pedunculopontine tegmental nucleus
nTPM: 73.2
2334 Male, age 80, both hemispheres 139.1
1921 Female, age 85, both hemispheres 52.5
2338 Male, age 61, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 35.0
2502 Female, age 75, unknown 45.6
1795 Male, age 51, unknown 36.0
1947 Male, age 18, unknown 23.4
Periaquaductal grey, dorsal
nTPM: 46.9
1831 Male, age 72, unknown 95.6
2464 Female, age 72, unknown 45.0
2850 Male, age 76, both hemispheres 33.6
1840 Male, age 53, unknown 13.5
Periaquaductal grey, lateral
nTPM: 27.5
2272 Male, age 74, both hemispheres 42.8
2053 Male, age 18, unknown 24.6
2140 Male, age 76, both hemispheres 15.2
Pretectal area
nTPM: 40.0
1817 Female, age 42, unknown 64.7
2316 Male, age 76, right hemisphere 63.1
2825 Male, age 18, unknown 44.3
1815 Male, age 53, unknown 42.9
2007 Male, age 72, unknown 41.5
1816 Male, age 51, unknown 39.7
2667 Female, age 75, unknown 37.5
2273 Male, age 74, both hemispheres 34.1
1944 Female, age 72, unknown 27.0
2224 Female, age 72, unknown 26.2
2407 Male, age 75, both hemispheres 18.7
Red nucleus
nTPM: 69.6
1904 Male, age 53, unknown 120.3
1821 Female, age 72, unknown 105.3
2769 Male, age 72, unknown 89.9
2227 Male, age 72, unknown 87.1
2588 Male, age 74, left hemisphere 79.5
1865 Male, age 51, unknown 65.0
2503 Female, age 72, unknown 59.8
1954 Female, age 42, unknown 50.0
2725 Female, age 75, unknown 50.0
2584 Male, age 75, left hemisphere 46.5
2785 Male, age 18, unknown 42.2
2823 Male, age 76, right hemisphere 39.2
Substantia nigra
nTPM: 75.4
2699 Male, age 18, unknown 151.2
2665 Male, age 74, both hemispheres 150.0
1851 Male, age 51, unknown 100.4
1916 Female, age 42, unknown 62.9
2241 Male, age 72, unknown 61.7
2409 Female, age 72, unknown 58.0
1941 Male, age 53, unknown 48.4
1889 Female, age 72, unknown 44.8
2590 Female, age 75, unknown 44.0
2583 Male, age 75, right hemisphere 32.2
Superior colliculus
nTPM: 53.1
2587 Male, age 74, left hemisphere 107.3
2668 Female, age 75, unknown 74.4
1995 Male, age 72, unknown 57.3
1796 Male, age 53, unknown 56.9
1895 Male, age 76, right hemisphere 51.8
2261 Male, age 18, unknown 50.5
1839 Male, age 51, unknown 44.2
1913 Female, age 42, unknown 41.4
2087 Female, age 72, unknown 37.0
2664 Male, age 75, both hemispheres 9.8
Ventral tegmental area
nTPM: 169.4
1915 Female, age 42, unknown 262.9
2218 Male, age 76, both hemispheres 259.6
2021 Male, age 53, unknown 155.5
2223 Female, age 72, unknown 123.0
2410 Female, age 72, unknown 112.6
1942 Male, age 51, unknown 103.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 983.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 983.5
Samples: 139

Max nTPM: 17580.0
Min nTPM: 23.6
Std nTPM: 1955.6
Median nTPM: 425.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17580.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 9008.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7861.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 6531.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 5586.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 5170.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3607.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 3382.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 3083.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 2474.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2247.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.