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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:15.0 nTPM
HPA:15.0 nTPM
GTEx:232.1 nTPM
FANTOM5:130.4 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Amygdala
nTPM: 14.8
2514 Male, age 75, right hemisphere 17.1
2517 Female, age 94, left hemisphere 14.6
2814 Male, age 76, right hemisphere 14.3
2695 Female, age 67, right hemisphere 14.2
1987 Female, age 91, left hemisphere 13.6
Basal amygdala
nTPM: 14.2
1955 Male, age 76, both hemispheres 15.3
2110 Male, age 80, left hemisphere 14.7
2609 Male, age 75, right hemisphere 14.6
2243 Female, age 91, right hemisphere 13.9
2827 Female, age 67, right hemisphere 13.3
2685 Female, age 94, left hemisphere 13.2
Central amygdala
nTPM: 15.0
2826 Female, age 94, left hemisphere 17.3
2515 Male, age 75, right hemisphere 14.9
1905 Male, age 76, both hemispheres 14.2
2239 Male, age 80, left hemisphere 14.2
2701 Female, age 91, right hemisphere 14.2
Corticomedial amygdala
nTPM: 13.8
2428 Male, age 75, right hemisphere 15.0
2829 Male, age 80, left hemisphere 14.2
2242 Female, age 91, right hemisphere 14.0
2240 Male, age 76, both hemispheres 13.5
2535 Female, age 67, right hemisphere 13.4
2429 Female, age 94, left hemisphere 13.0
Lateral amygdala
nTPM: 15.0
2255 Female, age 91, right hemisphere 16.4
2534 Female, age 94, left hemisphere 16.0
1883 Male, age 76, both hemispheres 15.1
2830 Female, age 67, right hemisphere 14.3
2256 Male, age 80, left hemisphere 14.2
2516 Male, age 75, right hemisphere 14.2
Stria terminalis, bed nucleus
nTPM: 12.6
2201 Male, age 74, unknown 14.2
1974 Female, age 91, both hemispheres 12.4
2486 Female, age 94, both hemispheres 11.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 232.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 232.1
Samples: 152

Max nTPM: 2851.4
Min nTPM: 89.8
Std nTPM: 227.3
Median nTPM: 197.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2851.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 569.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 449.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 446.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 428.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 420.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 417.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 375.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 374.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 370.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 364.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 358.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 355.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 353.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 344.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 308.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 307.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 298.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 296.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 295.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 295.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 292.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 290.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 290.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 282.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 277.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 276.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 272.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 266.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 266.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 264.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 259.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 257.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 256.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 254.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 254.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 253.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 252.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 251.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 251.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 247.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 246.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 244.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 244.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 239.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 238.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 235.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 234.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 232.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 232.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 231.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 231.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 230.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 228.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 228.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 225.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 221.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 220.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 220.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 217.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 215.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 213.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 212.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 211.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 211.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 207.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 207.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 206.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 205.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 204.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 203.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 201.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 199.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 199.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 199.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 197.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 197.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 196.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 195.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 194.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 194.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 191.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 188.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 186.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 185.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 185.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 185.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 185.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 184.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 182.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 181.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 181.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 180.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 176.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 176.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 175.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 175.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 173.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 173.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 171.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 171.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 171.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 170.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 169.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 169.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 168.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 168.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 167.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 165.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 165.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 165.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 164.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 164.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 162.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 162.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 161.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 159.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 159.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 157.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 156.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 154.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 154.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 154.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 153.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 150.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 149.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 149.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 148.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 146.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 144.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 137.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 137.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 137.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 136.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 135.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 135.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 134.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 134.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 133.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 131.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 125.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 124.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 123.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 118.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 116.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 114.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 107.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 102.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 99.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 93.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 89.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 130.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 130.4
FF:10151-102I7 76 years, female 130.4

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