MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA:15.8 nTPM
GTEx:266.2 nTPM
FANTOM5:196.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
1870 Female, age 42, unknown 15.4
2666 Male, age 74, left hemisphere 15.4
1833 Male, age 53, unknown 15.1
2411 Female, age 72, unknown 15.1
2019 Male, age 18, unknown 14.8
1830 Male, age 51, unknown 14.0
2828 Female, age 72, unknown 13.9
1827 Male, age 72, unknown 13.8
2586 Male, age 75, left hemisphere 12.8
2219 Male, age 76, both hemispheres 12.0
Dorsal raphe nucleus
nTPM: 15.2
1828 Male, age 53, unknown 16.5
2016 Female, age 72, unknown 15.6
2047 Male, age 72, unknown 15.1
2298 Female, age 72, unknown 14.5
2750 Male, age 76, both hemispheres 14.3
Inferior colliculus
nTPM: 14.3
1848 Female, age 42, unknown 14.7
2849 Male, age 72, unknown 14.6
1890 Male, age 53, unknown 14.3
2097 Female, age 72, unknown 13.5
Median raphe nucleus
nTPM: 15.4
2220 Male, age 76, midline 15.4
Pedunculopontine tegmental nucleus
nTPM: 15.8
2338 Male, age 61, both hemispheres 19.9
2334 Male, age 80, both hemispheres 14.6
1921 Female, age 85, both hemispheres 12.9
Periaquaductal grey, anterior
nTPM: 14.5
2502 Female, age 75, unknown 14.9
1947 Male, age 18, unknown 14.5
1795 Male, age 51, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 14.5
1831 Male, age 72, unknown 15.0
2464 Female, age 72, unknown 15.0
1840 Male, age 53, unknown 14.5
2850 Male, age 76, both hemispheres 13.6
Periaquaductal grey, lateral
nTPM: 14.8
2140 Male, age 76, both hemispheres 15.2
2053 Male, age 18, unknown 14.7
2272 Male, age 74, both hemispheres 14.6
Pretectal area
nTPM: 13.9
1944 Female, age 72, unknown 15.2
1817 Female, age 42, unknown 14.8
2224 Female, age 72, unknown 14.8
2825 Male, age 18, unknown 14.2
2007 Male, age 72, unknown 13.9
2667 Female, age 75, unknown 13.9
2273 Male, age 74, both hemispheres 13.8
2316 Male, age 76, right hemisphere 13.5
1815 Male, age 53, unknown 13.4
2407 Male, age 75, both hemispheres 12.8
1816 Male, age 51, unknown 12.7
Red nucleus
nTPM: 15.5
2227 Male, age 72, unknown 17.5
2769 Male, age 72, unknown 17.5
1954 Female, age 42, unknown 16.5
2503 Female, age 72, unknown 16.4
1821 Female, age 72, unknown 16.3
1865 Male, age 51, unknown 15.2
2725 Female, age 75, unknown 15.0
1904 Male, age 53, unknown 14.5
2785 Male, age 18, unknown 14.5
2584 Male, age 75, left hemisphere 14.2
2823 Male, age 76, right hemisphere 14.2
2588 Male, age 74, left hemisphere 13.9
Substantia nigra
nTPM: 14.9
2409 Female, age 72, unknown 16.7
2665 Male, age 74, both hemispheres 16.5
1851 Male, age 51, unknown 16.1
1941 Male, age 53, unknown 15.4
2590 Female, age 75, unknown 15.3
1916 Female, age 42, unknown 14.9
1889 Female, age 72, unknown 14.6
2699 Male, age 18, unknown 14.4
2583 Male, age 75, right hemisphere 13.9
2241 Male, age 72, unknown 11.2
Superior colliculus
nTPM: 14.1
1913 Female, age 42, unknown 15.5
1995 Male, age 72, unknown 15.2
2587 Male, age 74, left hemisphere 14.9
1839 Male, age 51, unknown 14.5
2261 Male, age 18, unknown 14.2
2087 Female, age 72, unknown 13.7
1895 Male, age 76, right hemisphere 13.5
1796 Male, age 53, unknown 13.4
2668 Female, age 75, unknown 13.4
2664 Male, age 75, both hemispheres 12.3
Ventral tegmental area
nTPM: 15.1
2410 Female, age 72, unknown 17.4
1915 Female, age 42, unknown 15.4
1942 Male, age 51, unknown 15.3
2223 Female, age 72, unknown 14.4
2021 Male, age 53, unknown 14.2
2218 Male, age 76, both hemispheres 14.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 266.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 266.2
Samples: 139

Max nTPM: 623.0
Min nTPM: 112.6
Std nTPM: 84.5
Median nTPM: 257.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 623.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 511.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 452.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 438.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 416.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 409.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 397.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 396.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 391.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 386.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 385.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.0
FF:10158-103A5 76 years, female 196.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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