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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:17061.1 nTPM
HPA:17061.1 nTPM
GTEx:8522.7 nTPM
FANTOM5:227.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB015377
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 17061.1
overview
Male, age 65
Small intestine sample 232
nTPM: 27639.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 14006.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 13297.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 13300.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8522.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 8522.7
Samples: 187

Max nTPM: 157980.8
Min nTPM: 12.1
Std nTPM: 12818.9
Median nTPM: 6419.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 157980.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 37137.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 31864.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 30669.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 26832.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 25641.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 23970.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 23263.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 22785.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 22625.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 21397.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 20948.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 20022.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 19185.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 18737.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 17445.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 17118.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 16514.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 16301.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 16212.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 16205.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 16160.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 16137.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 16012.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 15712.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 15282.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 15195.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 14237.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 13950.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 13686.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 13486.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 13460.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 13163.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 13117.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 12901.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 12861.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 12166.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 12058.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 11650.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 11624.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 11462.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 11374.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 11116.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 10720.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 10619.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 10611.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 10510.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 10503.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 10066.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 10000.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 9701.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 9584.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 9530.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 9058.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 9046.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 8907.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 8846.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 8823.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 8800.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 8752.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 8617.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 8593.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 8539.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 8482.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 8288.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 8210.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 8038.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 7914.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 7882.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 7826.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 7775.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 7717.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 7714.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 7704.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 7637.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 7579.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 7453.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 7445.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 7403.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 7401.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 7387.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 7327.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 7310.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 7186.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 7123.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 7018.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 6963.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 6951.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 6947.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 6884.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 6801.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 6648.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 6478.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 6419.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 6267.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 6170.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 6109.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 6107.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 5944.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 5844.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 5825.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 5792.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 5738.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 5632.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 5540.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 5467.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 5440.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5393.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 5388.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 5344.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 5169.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 5056.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 5054.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 5023.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 5017.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 4970.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 4953.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 4933.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 4885.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 4770.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 4687.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 4652.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 4375.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 4277.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 4253.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 4243.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 4188.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 4029.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 4021.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 4009.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3988.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3848.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 3831.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3789.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 3762.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 3621.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 3612.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 3565.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3531.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3507.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 3461.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3319.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 3211.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3126.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 3045.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2929.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2922.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2670.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2627.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2584.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2407.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2270.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2255.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 2113.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1817.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1697.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1584.8
GTEX-1192X-2526-SM-59868 50-59 years, male 1520.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1520.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1054.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 548.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 540.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 493.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 485.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 372.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 281.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 214.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 185.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 152.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 134.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 122.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 116.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 101.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 98.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 96.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 81.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 72.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 67.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 67.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 65.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 61.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 51.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 38.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 37.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 17.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 13.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 12.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 227.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 227.9
FF:10024-101D6 15,40,85 years, mixed 227.9

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