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TRAJ6
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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:56.6 nTPM
GTEx:56.6 nTPM
FANTOM5:0.0 Scaled Tags Per Million

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 56.6
Samples: 105

Max nTPM: 192.8
Min nTPM: 0.0
Std nTPM: 34.1
Median nTPM:
495_1 57 years, female 192.8
414_1 84 years, female 168.7
315_1 62 years, female 142.5
142_1 61 years, female 127.8
308_1 70 years, female 112.3
322_1 76 years, male 107.1
389_1 86 years, female 106.9
149_1 88 years, male 105.8
316_1 62 years, male 104.3
466_1 57 years, female 101.9
348_1 84 years, male 101.1
518_1 75 years, female 100.8
314_1 67 years, male 99.3
265_1 87 years, male 97.7
286_1 68 years, female 96.8
217_1 76 years, male 94.5
307_1 66 years, female 91.7
491_1 89 years, female 91.0
6_1 73 years, female 85.3
218_1 71 years, female 84.5
43_1 64 years, female 84.4
32_1 67 years, male 81.4
415_1 77 years, female 80.8
396_1 62 years, male 77.3
81_1 67 years, male 76.7
288_1 66 years, female 76.2
499_1 55 years, female 75.8
354_1 81 years, female 74.6
526_1 61 years, male 73.3
318_1 68 years, male 70.2
468_1 89 years, male 69.8
503_1 68 years, male 69.5
229_1 69 years, female 69.4
2_1 77 years, female 68.3
313_1 79 years, female 67.3
35_1 74 years, female 66.8
117_1 61 years, male 63.8
254_1 77 years, female 63.7
126_1 63 years, male 63.0
311_1 78 years, male 58.5
18_1 88 years, male 57.5
317_1 60 years, male 56.9
490_1 67 years, female 56.4
347_1 72 years, male 55.9
163_1 78 years, male 54.5
394_1 75 years, female 54.5
349_1 83 years, male 54.3
89_1 63 years, male 53.7
447_1 81 years, male 53.6
413_1 59 years, female 53.5
376_1 75 years, female 52.0
172_1 72 years, female 51.4
405_1 91 years, male 51.3
251_1 78 years, male 49.9
350_1 84 years, female 49.5
42_1 85 years, male 49.0
162_1 79 years, female 48.2
355_1 70 years, female 47.5
404_1 82 years, female 47.4
384_1 83 years, male 47.1
145_1 84 years, male 45.9
139_1 64 years, female 45.8
335_1 73 years, female 45.4
120_1 70 years, female 45.2
375_1 74 years, female 44.5
324_1 76 years, male 44.1
321_1 62 years, female 42.8
386_1 76 years, male 42.1
115_1 83 years, male 41.1
99_1 64 years, male 37.9
109_1 81 years, female 37.3
237_1 82 years, male 37.0
352_1 62 years, male 36.6
319_1 81 years, male 35.5
320_1 89 years, female 34.2
353_1 82 years, female 33.9
4_1 88 years, female 33.6
480_1 63 years, male 33.6
501_1 88 years, male 31.2
266_1 85 years, male 30.8
356_1 87 years, female 30.7
506_1 65 years, male 28.5
41_1 94 years, female 28.4
291_1 76 years, male 28.0
517_1 88 years, male 27.0
137_1 83 years, male 25.4
189_1 76 years, male 24.4
292_1 71 years, male 24.1
379_1 60 years, male 24.1
264_1 73 years, female 23.1
452_1 88 years, female 21.0
295_1 61 years, female 20.3
119_1 70 years, female 19.4
153_1 70 years, female 19.4
351_1 91 years, male 19.4
293_1 68 years, female 16.0
177_1 74 years, male 15.1
425_1 59 years, female 14.6
246_1 77 years, male 13.5
17_1 71 years, male 13.0
243_1 75 years, male 11.6
406_1 79 years, male 10.9
9_1 66 years, female 9.8
377_1 82 years, female 6.4
173_1 67 years, male 0.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 0.0
FF:10030-101E3 24-65 years, mixed 0.0

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