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IGHA2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2261.3 nTPM
HPA:579.5 nTPM
GTEx:2261.3 nTPM
FANTOM5:81.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001217Antibody HPA006013
Glandular cells LowMedium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 579.5
overview
Male, age 65
Small intestine sample 232
nTPM: 26
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 9.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2277.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 4.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2261.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2261.3
Samples: 187

Max nTPM: 82791.8
Min nTPM: 1.3
Std nTPM: 6249.5
Median nTPM: 1229.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 82791.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 14335.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 10560.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 8451.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 8434.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 7942.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 7320.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 6301.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 6017.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 5975.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 5887.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 5867.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5791.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 5724.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 5689.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 5000.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 4996.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 4249.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 4162.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 4127.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 4058.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3913.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3734.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3733.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 3635.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 3587.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3578.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3425.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 3303.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3190.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 3121.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3085.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3029.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 2983.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2877.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2868.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2850.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2842.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2786.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2765.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2649.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2581.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2546.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2539.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2473.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2410.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2399.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2392.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2363.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2278.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2252.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 2226.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2196.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2125.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2114.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 2106.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 2067.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2063.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2030.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2012.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2006.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1949.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1922.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1899.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1846.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1835.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1803.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1802.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1784.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1764.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1704.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1573.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1555.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1546.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1473.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1473.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1456.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1439.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1437.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1430.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1422.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1418.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1380.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1363.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1360.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1354.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1315.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1291.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1289.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1284.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1272.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1250.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1243.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1229.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1228.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1215.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1215.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1197.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1188.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1161.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1159.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1149.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1147.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1138.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1131.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1126.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1120.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1107.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1082.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1078.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1062.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1002.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 986.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 978.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 976.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 965.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 955.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 949.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 935.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 903.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 796.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 751.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 744.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 735.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 709.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 704.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 703.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 686.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 669.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 657.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 635.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 635.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 631.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 614.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 605.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 596.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 589.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 586.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 570.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 566.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 557.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 555.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 495.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 491.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 474.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 469.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 436.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 427.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 422.0
GTEX-1192X-2526-SM-59868 50-59 years, male 411.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 402.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 371.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 368.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 362.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 325.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 285.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 227.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 217.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 193.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 187.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 176.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 131.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 82.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 69.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 67.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 42.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 38.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 35.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 26.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 26.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 20.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 16.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 13.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 11.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 11.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 11.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 8.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 7.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 5.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 3.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 3.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 81.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 81.7
FF:10024-101D6 15,40,85 years, mixed 81.7

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